Skip to content

Commit 40fc710

Browse files
author
blakedewey
committed
Updated examples
1 parent 3b59710 commit 40fc710

File tree

1 file changed

+16
-7
lines changed

1 file changed

+16
-7
lines changed

nipype/interfaces/ants/segmentation.py

Lines changed: 16 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -278,16 +278,25 @@ class N4BiasFieldCorrection(ANTSCommand):
278278
>>> n4.inputs.n_iterations = [50,50,30,20]
279279
>>> n4.inputs.convergence_threshold = 1e-6
280280
>>> n4.cmdline
281-
'N4BiasFieldCorrection --convergence [ 50x50x30x20 ,1e-06] \
282-
--bsline-fitting [300] --image-dimension 3 --input-image structural.nii \
283-
--output structural_corrected.nii --shrink-factor 3'
281+
'N4BiasFieldCorrection --bsline-fitting [ 300 ] \
282+
--image-dimension 3 --input-image structural.nii \
283+
--convergence [ 50x50x30x20, 1e-06 ] --output structural_corrected.nii \
284+
--shrink-factor 3'
284285
285-
>>> n4_2 = N4BiasFieldCorrection()
286-
>>> n4_2.inputs.input_image = 'structural.nii'
287-
>>> n4_2.inputs.save_bias = True
286+
>>> n4_2 = n4.clone()
287+
>>> n4_2.inputs.bspline_order = 5
288288
>>> n4_2.cmdline
289+
'N4BiasFieldCorrection --bsline-fitting [ 300, 5 ] \
290+
--image-dimension 3 --input-image structural.nii \
291+
--convergence [ 50x50x30x20, 1e-06 ] --output structural_corrected.nii \
292+
--shrink-factor 3'
293+
294+
>>> n4_3 = N4BiasFieldCorrection()
295+
>>> n4_3.inputs.input_image = 'structural.nii'
296+
>>> n4_3.inputs.save_bias = True
297+
>>> n4_3.cmdline
289298
'N4BiasFieldCorrection --image-dimension 3 --input-image structural.nii \
290-
--output [structural_corrected.nii,structural_bias.nii]'
299+
--output [ structural_corrected.nii, structural_bias.nii ]'
291300
"""
292301

293302
_cmd = 'N4BiasFieldCorrection'

0 commit comments

Comments
 (0)