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mnoergaardeffigies
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FIX: update gm flag to include correct input parameters
Co-authored-by: Chris Markiewicz <[email protected]>
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nipype/interfaces/freesurfer/petsurfer.py

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -289,7 +289,11 @@ class GTMPVCInputSpec(FSTraitedSpec):
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desc="voxsize : set RBV voxel resolution (good for when standard res takes too much memory)",
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)
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mg = traits.List(argstr="--id %s...", desc="Manually specify segmentation ids")
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mg = traits.Tuple(
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traits.Float,
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traits.List(traits.String),
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argstr="--mg %g %s...",
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desc="gmthresh RefId1 RefId2 ...: perform Mueller-Gaertner PVC, gmthresh is min gm pvf bet 0 and 1")
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mg_ref_cerebral_wm = traits.Bool(
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argstr="--mg-ref-cerebral-wm", desc=" set MG RefIds to 2 and 41"

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