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fix: doctest
1 parent ebfbc42 commit 4318274

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2 files changed

+5
-4
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2 files changed

+5
-4
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nipype/interfaces/freesurfer/preprocess.py

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Original file line numberDiff line numberDiff line change
@@ -1510,6 +1510,7 @@ class MNIBiasCorrection(FSCommand):
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>>> from nipype.interfaces.freesurfer import MNIBiasCorrection
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>>> correct = MNIBiasCorrection()
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>>> correct.inputs.in_file = "norm.mgz"
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>>> correct.inputs.out_file = "norm_output.mgz"
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>>> correct.inputs.iterations = 6
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>>> correct.inputs.protocol_iterations = 1000
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>>> correct.inputs.distance = 50

nipype/interfaces/freesurfer/tests/test_preprocess.py

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Original file line numberDiff line numberDiff line change
@@ -102,11 +102,11 @@ def test_mandatory_outvol(create_files_in_directory):
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with pytest.raises(ValueError): mni.run()
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# rest of mandatory inputs
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mni.inputs.out_file = 'bias_corrected_file'
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mni.inputs.out_file = 'bias_corrected_output'
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assert mni.cmdline == ('mri_nu_correct.mni --i %s --n 4 --o bias_corrected_file.mgz'
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assert mni.cmdline == ('mri_nu_correct.mni --i %s --n 4 --o bias_corrected_output.mgz'
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% filelist[0])
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# constructor based tests
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mni2 = freesurfer.MNIBiasCorrection(in_file=filelist[0], out_file='bias_corrected_file')
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assert mni2.cmdline == ('mri_nu_correct.mni --i %s --n 4 --o bias_corrected_file.mgz'
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mni2 = freesurfer.MNIBiasCorrection(in_file=filelist[0], out_file='bias_corrected_output')
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assert mni2.cmdline == ('mri_nu_correct.mni --i %s --n 4 --o bias_corrected_output.mgz'
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% filelist[0])

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