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lines changed Original file line number Diff line number Diff line change @@ -603,9 +603,13 @@ class EddyInputSpec(FSLCommandInputSpec):
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in_topup_movpar = File (
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exists = True ,
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requires = ["in_topup_fieldcoef" ],
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- desc = "Topup results file containing the movement parameters" ,
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+ desc = "Topup results file containing the movement parameters (movpar.txt)" ,
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+ )
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+ field = File (
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+ exists = True ,
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+ argstr = "--field=%s" ,
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+ desc = ("Non-topup derived fieldmap scaled in Hz" ),
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)
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- field = File (argstr = "--field=%s" , desc = ("Non-topup derived fieldmap scaled in Hz" ))
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field_mat = File (
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exists = True ,
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argstr = "--field_mat=%s" ,
@@ -725,12 +729,14 @@ class EddyInputSpec(FSLCommandInputSpec):
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requires = ["repol" ],
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min_ver = "5.0.10" ,
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)
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- mb = traits .Int (argstr = "--mb=%s" , desc = "Multi-band factor" , min_ver = "5.0.10" )
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- mb_offs = traits .Enum (
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+ multiband_factor = traits .Int (
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+ argstr = "--mb=%s" , desc = "Multi-band factor" , min_ver = "5.0.10"
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+ )
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+ multiband_offset = traits .Enum (
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0 ,
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1 ,
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- 1 ,
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- argstr = "--mb_offs=%s " ,
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+ argstr = "--mb_offs=%d " ,
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desc = (
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"Multi-band offset (-1 if bottom slice removed, 1 if " "top slice removed"
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),
@@ -744,7 +750,7 @@ class EddyInputSpec(FSLCommandInputSpec):
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requires = ["use_cuda" ],
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min_ver = "5.0.11" ,
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)
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- s2v_niter = traits .Int (
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+ slice2vol_iterations = traits .Int (
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argstr = "--s2v_niter=%s" ,
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desc = "Number of iterations for slice-to-vol" ,
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requires = ["mporder" ],
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