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eddy requires full path for out_base
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nipype/interfaces/fsl/epi.py

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Original file line numberDiff line numberDiff line change
@@ -489,6 +489,8 @@ def _num_threads_update(self):
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def _format_arg(self, name, spec, value):
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if name == 'in_topup_fieldcoef':
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return spec.argstr % value.split('_fieldcoef')[0]
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if name == 'out_base':
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return spec.argstr % os.path.abspath(value)
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return super(Eddy, self)._format_arg(name, spec, value)
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def _list_outputs(self):

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