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lines changed Original file line number Diff line number Diff line change @@ -1876,6 +1876,7 @@ class MakeSurfacesInputSpec(FSTraitedSpec):
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in_filled = File (exists = True , mandatory = True ,
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desc = "Implicit input file filled.mgz" )
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# optional
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+ in_white = File (exists = True , desc = "Implicit input that is sometimes used" )
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in_label = File (exists = True , mandatory = False , xor = ['noaparc' ],
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desc = "Implicit input label/<hemisphere>.aparc.annot" )
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orig_white = File (argstr = "-orig_white %s" , exists = True , mandatory = False ,
@@ -1958,6 +1959,8 @@ def run(self, **inputs):
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folder = 'mri' , basename = 'wm.mgz' )
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copy2subjdir (self , self .inputs .in_filled ,
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folder = 'mri' , basename = 'filled.mgz' )
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+ copy2subjdir (self , self .inputs .in_white ,
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+ 'surf' , '{0}.white' .format (self .inputs .hemisphere ))
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for originalfile in [self .inputs .in_aseg ,
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self .inputs .in_T1 ]:
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copy2subjdir (self , originalfile , folder = 'mri' )
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