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lines changed Original file line number Diff line number Diff line change @@ -482,6 +482,23 @@ class ProbTrackX2OutputSpec(ProbTrackXOutputSpec):
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class ProbTrackX2 (ProbTrackX ):
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+ """ Use FSL probtrackx2 for tractography on bedpostx results
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+
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+ Examples
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+ --------
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+
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+ >>> from nipype.interfaces import fsl
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+ >>> pbx2 = fsl.ProbTrackX2 seed='data.bedpostX/seed_source.nii.gz', \
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+ thsamples=['data.bedpostX/merged_th1samples.nii.gz'], \
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+ fsamples=['data.bedpostX/merged_f1samples.nii.gz'], \
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+ phsamples=['data.bedpostX/merged_ph1samples.nii.gz'], \
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+ mask='data.bedpostX/nodif_brain_mask.nii.gz', \
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+ out_dir='.',
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+ n_samples=3, \
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+ n_steps=10)
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+ >>> pbx2.cmdline
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+ 'probtrackx2 --forcedir -m data.bedpostX/nodif_brain_mask.nii.gz --nsamples=3 --nsteps=10 --opd --dir=. --samples=merged --seed=data.bedpostX/seed_source.nii.gz'
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+ """
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_cmd = 'probtrackx2'
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input_spec = ProbTrackX2InputSpec
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output_spec = ProbTrackX2OutputSpec
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