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chrisgorgochrisgorgo
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Fixed input/outputspec names.
1 parent 01b38d4 commit 4a2385f

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2 files changed

+16
-16
lines changed

2 files changed

+16
-16
lines changed

‎examples/smri_ants_build_template.py

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -95,18 +95,18 @@
9595
"""
9696

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buildTemplateIteration1=ANTSTemplateBuildSingleIterationWF('iteration01')
98-
tbuilder.connect(initAvg, 'output_average_image', buildTemplateIteration1, 'InputSpec.fixed_image')
99-
tbuilder.connect(datasource, 'imageList', buildTemplateIteration1, 'InputSpec.images')
100-
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration1, 'InputSpec.ListOfPassiveImagesDictionaries')
98+
tbuilder.connect(initAvg, 'output_average_image', buildTemplateIteration1, 'inputspec.fixed_image')
99+
tbuilder.connect(datasource, 'imageList', buildTemplateIteration1, 'inputspec.images')
100+
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration1, 'inputspec.ListOfPassiveImagesDictionaries')
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102102
"""
103103
7. Define the second iteration of template building
104104
"""
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buildTemplateIteration2 = ANTSTemplateBuildSingleIterationWF('iteration02')
107-
tbuilder.connect(buildTemplateIteration1, 'OutputSpec.template', buildTemplateIteration2, 'InputSpec.fixed_image')
108-
tbuilder.connect(datasource, 'imageList', buildTemplateIteration2, 'InputSpec.images')
109-
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration2, 'InputSpec.ListOfPassiveImagesDictionaries')
107+
tbuilder.connect(buildTemplateIteration1, 'outputspec.template', buildTemplateIteration2, 'inputspec.fixed_image')
108+
tbuilder.connect(datasource, 'imageList', buildTemplateIteration2, 'inputspec.images')
109+
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration2, 'inputspec.ListOfPassiveImagesDictionaries')
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111111
"""
112112
8. Move selected files to a designated results folder
@@ -115,8 +115,8 @@
115115
datasink = pe.Node(io.DataSink(), name="datasink")
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datasink.inputs.base_directory = os.path.join(requestedPath, "results")
117117

118-
tbuilder.connect(buildTemplateIteration2, 'OutputSpec.template',datasink,'PrimaryTemplate')
119-
tbuilder.connect(buildTemplateIteration2, 'OutputSpec.passive_deformed_templates',datasink,'PassiveTemplate')
118+
tbuilder.connect(buildTemplateIteration2, 'outputspec.template',datasink,'PrimaryTemplate')
119+
tbuilder.connect(buildTemplateIteration2, 'outputspec.passive_deformed_templates',datasink,'PassiveTemplate')
120120
tbuilder.connect(initAvg, 'output_average_image', datasink,'PreRegisterAverage')
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"""

‎examples/smri_ants_build_template_new.py

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -101,9 +101,9 @@
101101
BeginANTS = buildTemplateIteration1.get_node("BeginANTS")
102102
BeginANTS.plugin_args={'qsub_args': '-S /bin/bash -pe smp1 8-12 -l mem_free=6000M -o /dev/null -e /dev/null queue_name', 'overwrite': True}
103103

104-
tbuilder.connect(initAvg, 'output_average_image', buildTemplateIteration1, 'InputSpec.fixed_image')
105-
tbuilder.connect(datasource, 'imageList', buildTemplateIteration1, 'InputSpec.images')
106-
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration1, 'InputSpec.ListOfPassiveImagesDictionaries')
104+
tbuilder.connect(initAvg, 'output_average_image', buildTemplateIteration1, 'inputspec.fixed_image')
105+
tbuilder.connect(datasource, 'imageList', buildTemplateIteration1, 'inputspec.images')
106+
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration1, 'inputspec.ListOfPassiveImagesDictionaries')
107107

108108
"""
109109
7. Define the second iteration of template building
@@ -112,9 +112,9 @@
112112
buildTemplateIteration2 = antsRegistrationTemplateBuildSingleIterationWF('iteration02')
113113
BeginANTS = buildTemplateIteration2.get_node("BeginANTS")
114114
BeginANTS.plugin_args={'qsub_args': '-S /bin/bash -pe smp1 8-12 -l mem_free=6000M -o /dev/null -e /dev/null queue_name', 'overwrite': True}
115-
tbuilder.connect(buildTemplateIteration1, 'OutputSpec.template', buildTemplateIteration2, 'InputSpec.fixed_image')
116-
tbuilder.connect(datasource, 'imageList', buildTemplateIteration2, 'InputSpec.images')
117-
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration2, 'InputSpec.ListOfPassiveImagesDictionaries')
115+
tbuilder.connect(buildTemplateIteration1, 'outputspec.template', buildTemplateIteration2, 'inputspec.fixed_image')
116+
tbuilder.connect(datasource, 'imageList', buildTemplateIteration2, 'inputspec.images')
117+
tbuilder.connect(datasource, 'passiveImagesDictionariesList', buildTemplateIteration2, 'inputspec.ListOfPassiveImagesDictionaries')
118118

119119
"""
120120
8. Move selected files to a designated results folder
@@ -123,8 +123,8 @@
123123
datasink = pe.Node(io.DataSink(), name="datasink")
124124
datasink.inputs.base_directory = os.path.join(requestedPath, "results")
125125

126-
tbuilder.connect(buildTemplateIteration2, 'OutputSpec.template',datasink,'PrimaryTemplate')
127-
tbuilder.connect(buildTemplateIteration2, 'OutputSpec.passive_deformed_templates',datasink,'PassiveTemplate')
126+
tbuilder.connect(buildTemplateIteration2, 'outputspec.template',datasink,'PrimaryTemplate')
127+
tbuilder.connect(buildTemplateIteration2, 'outputspec.passive_deformed_templates',datasink,'PassiveTemplate')
128128
tbuilder.connect(initAvg, 'output_average_image', datasink,'PreRegisterAverage')
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130130
"""

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