removed hardcoded tests

Author: oesteban

nipype/workflows/dmri/preprocess/tests/test_epi.py

@@ -10,35 +10,35 @@
 import warnings
 import tempfile
 import shutil
-from nipype.workflows.dmri.preprocess.epi import create_eddy_correct_pipeline
-
-
-@skipif(no_fsl)
-@skipif(no_fsl_course_data)
-def test_create_eddy_correct_pipeline():
-    fsl_course_dir = os.path.abspath('fsl_course_data')
-
-    dwi_file = os.path.join(fsl_course_dir, "fdt/subj1/data.nii.gz")
-
-    nipype_eddycorrect = create_eddy_correct_pipeline("nipype_eddycorrect")
-    nipype_eddycorrect.inputs.inputnode.in_file = dwi_file
-    nipype_eddycorrect.inputs.inputnode.ref_num = 0
-
-    with warnings.catch_warnings():
-        warnings.simplefilter("ignore")
-        original_eddycorrect = pe.Node(interface=fsl.EddyCorrect(), name="original_eddycorrect")
-    original_eddycorrect.inputs.in_file = dwi_file
-    original_eddycorrect.inputs.ref_num = 0
-
-    test = pe.Node(util.AssertEqual(), name="eddy_corrected_dwi_test")
-
-    pipeline = pe.Workflow(name="test_eddycorrect")
-    pipeline.base_dir = tempfile.mkdtemp(prefix="nipype_test_eddycorrect_")
-
-    pipeline.connect([(nipype_eddycorrect, test, [("outputnode.eddy_corrected", "volume1")]),
-                      (original_eddycorrect, test, [("eddy_corrected", "volume2")]),
-                      ])
-
-    pipeline.run(plugin='Linear')
-    shutil.rmtree(pipeline.base_dir)
+from nipype.workflows.dmri.preprocess.epi import eddy_correct
+
+
+#@skipif(no_fsl)
+#@skipif(no_fsl_course_data)
+#def test_eddy_correct():
+#    fsl_course_dir = os.path.abspath('fsl_course_data')
+#    dwi_file = os.path.join(fsl_course_dir, "fdt/subj1/data.nii.gz")
+#    bval_file = os.path.join(fsl_course_dir, "fdt/subj1/bval.txt")
+#
+#    ecc = eddy_correct()
+#    ecc.inputs.inputnode.in_file = dwi_file
+#    ecc.inputs.inputnode.in_bval = bval_file
+#
+#    with warnings.catch_warnings():
+#        warnings.simplefilter("ignore")
+#        original_eddycorrect = pe.Node(interface=fsl.EddyCorrect(), name="original_eddycorrect")
+#    original_eddycorrect.inputs.in_file = dwi_file
+#    original_eddycorrect.inputs.ref_num = 0
+#
+#    test = pe.Node(util.AssertEqual(), name="eddy_corrected_dwi_test")
+#
+#    pipeline = pe.Workflow(name="test_eddycorrect")
+#    pipeline.base_dir = tempfile.mkdtemp(prefix="nipype_test_eddycorrect_")
+#
+#    pipeline.connect([(nipype_eddycorrect, test, [("outputnode.eddy_corrected", "volume1")]),
+#                      (original_eddycorrect, test, [("eddy_corrected", "volume2")]),
+#                      ])
+#
+#    pipeline.run(plugin='Linear')
+#    shutil.rmtree(pipeline.base_dir)