@@ -678,17 +678,17 @@ def _list_outputs(self):
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'_variance.ext' , cwd = cwd )
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outputs ['std_img' ] = self ._gen_fname (outputs ['out_file' ] +
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'_sigma.ext' , cwd = cwd )
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-
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+
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# The mean image created if -stats option is specified ('meanvol')
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- # is missing the top and bottom slices. Therefore we only expose the
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- # mean image created by -meanvol option ('mean_reg') which isn't
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+ # is missing the top and bottom slices. Therefore we only expose the
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+ # mean image created by -meanvol option ('mean_reg') which isn't
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# corrupted.
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# Note that the same problem holds for the std and variance image.
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-
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+
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if isdefined (self .inputs .mean_vol ) and self .inputs .mean_vol :
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outputs ['mean_img' ] = self ._gen_fname (outputs ['out_file' ] +
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'_mean_reg.ext' , cwd = cwd )
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-
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+
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if isdefined (self .inputs .save_mats ) and self .inputs .save_mats :
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_ , filename = os .path .split (outputs ['out_file' ])
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matpathname = os .path .join (cwd , filename + '.mat' )
@@ -1223,7 +1223,7 @@ class FUGUEInputSpec(FSLCommandInputSpec):
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requires = ['fmap_out_file' ],
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desc = 'saves the unmasked fieldmap when using --savefmap' )
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save_unmasked_shift = traits .Bool (argstr = '--unmaskshift' ,
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- requires = ['shift_out_file ' ],
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+ requires = ['save_shift ' ],
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desc = 'saves the unmasked shiftmap when using --saveshift' )
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nokspace = traits .Bool (
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argstr = '--nokspace' , desc = 'do not use k-space forward warping' )
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