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fix: update antsApplyTransforms to treat image as a scalar
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examples/fmri_ants_openfmri.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -241,7 +241,7 @@ def create_reg_workflow(name='registration'):
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warpmean = pe.Node(ants.ApplyTransforms(),
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name='warpmean')
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warpmean.inputs.input_image_type = 3
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warpmean.inputs.input_image_type = 0
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warpmean.inputs.interpolation = 'Linear'
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warpmean.inputs.invert_transform_flags = [False, False]
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warpmean.inputs.terminal_output = 'file'
@@ -257,7 +257,7 @@ def create_reg_workflow(name='registration'):
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warpall = pe.MapNode(ants.ApplyTransforms(),
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iterfield=['input_image'],
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name='warpall')
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warpall.inputs.input_image_type = 3
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warpall.inputs.input_image_type = 0
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warpall.inputs.interpolation = 'Linear'
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warpall.inputs.invert_transform_flags = [False, False]
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warpall.inputs.terminal_output = 'file'
@@ -449,7 +449,7 @@ def create_fs_reg_workflow(name='registration'):
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Transform the mean image. First to anatomical and then to target
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"""
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warpmean = Node(ants.ApplyTransforms(), name='warpmean')
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warpmean.inputs.input_image_type = 3
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warpmean.inputs.input_image_type = 0
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warpmean.inputs.interpolation = 'Linear'
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warpmean.inputs.invert_transform_flags = [False, False]
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warpmean.inputs.terminal_output = 'file'
@@ -464,7 +464,7 @@ def create_fs_reg_workflow(name='registration'):
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warpall = pe.MapNode(ants.ApplyTransforms(),
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iterfield=['input_image'],
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name='warpall')
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warpall.inputs.input_image_type = 3
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warpall.inputs.input_image_type = 0
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warpall.inputs.interpolation = 'Linear'
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warpall.inputs.invert_transform_flags = [False, False]
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warpall.inputs.terminal_output = 'file'

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