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Chenge the default model to 2 to reflect FSL 5.0.9
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  • nipype/workflows/dmri/fsl

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nipype/workflows/dmri/fsl/dti.py

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@@ -17,7 +17,7 @@ def transpose(samples_over_fibres):
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def create_bedpostx_pipeline(name='bedpostx', params={'n_fibres':2, 'fudge':1, 'burn_in':1000,
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'n_jumps':1250, 'sample_every':25, 'model':1,
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'n_jumps':1250, 'sample_every':25, 'model':2,
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'cnlinear':True}):
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"""
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Creates a pipeline that does the same as bedpostx script from FSL -

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