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David Ellis
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FIX: corrects the output for copy_transform
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nipype/workflows/smri/freesurfer/autorecon1.py

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@@ -344,7 +344,7 @@ def awkfile(in_file, log_file):
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intensity_correction.inputs.out_file = 'nu.mgz'
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intensity_correction.inputs.iterations = 2
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ar1_wf.connect([(add_xform_to_orig, intensity_correction, [('out_file', 'in_file')]),
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(copy_transform, intensity_correction, [('transform', 'transform')])])
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(copy_transform, intensity_correction, [('out_file', 'transform')])])
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add_to_header_nu = pe.Node(AddXFormToHeader(), name="Add_XForm_to_NU")

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