@@ -1403,15 +1403,15 @@ def _format_arg(self, name, spec, value):
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class RandomiseInputSpec (FSLCommandInputSpec ):
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in_file = File (exists = True , desc = '4D input file' , argstr = '-i %s' , position = 0 , mandatory = True )
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base_name = traits .Str ('tbss_' , desc = 'the rootname that all generated files will have' ,
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- argstr = '-o %s ' , position = 1 , usedefault = True )
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- design_mat = File (exists = True , desc = 'design matrix file' , argstr = '-d %s' , position = 2 , mandatory = True )
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- tcon = File (exists = True , desc = 't contrasts file' , argstr = '-t %s' , position = 3 , mandatory = True )
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+ argstr = '-o "%s" ' , position = 1 , usedefault = True )
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+ design_mat = File (exists = True , desc = 'design matrix file' , argstr = '-d %s' , position = 2 )
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+ tcon = File (exists = True , desc = 't contrasts file' , argstr = '-t %s' , position = 3 )
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fcon = File (exists = True , desc = 'f contrasts file' , argstr = '-f %s' )
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mask = File (exists = True , desc = 'mask image' , argstr = '-m %s' )
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x_block_labels = File (exists = True , desc = 'exchangeability block labels file' , argstr = '-e %s' )
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demean = traits .Bool (desc = 'demean data temporally before model fitting' , argstr = '-D' )
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one_sample_group_mean = traits .Bool (desc = 'perform 1-sample group-mean test instead of generic permutation test' ,
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- argstr = '-l ' )
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+ argstr = '-1 ' )
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show_total_perms = traits .Bool (desc = 'print out how many unique permutations would be generated and exit' ,
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argstr = '-q' )
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show_info_parallel_mode = traits .Bool (desc = 'print out information required for parallel mode and exit' ,
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