rsfmri workflow test skeleton

Author: Shoshana Berleant

nipype/algorithms/tests/test_tsnr.py

@@ -13,10 +13,6 @@
 
 class TestTSNR(unittest.TestCase):
     ''' Note: Tests currently do a poor job of testing functionality '''
-    '''
-    in_file = InputMultiPath(File(exists=True), mandatory=True,
-    regress_poly = traits.Range(low=1, desc='Remove polynomials')
-    '''
 
     in_filenames = {
         'in_file': 'tsnrinfile.nii',

nipype/workflows/rsfmri/fsl/tests/test_resting.py

@@ -0,0 +1,53 @@
+# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
+# vi: set ft=python sts=4 ts=4 sw=4 et:
+
+from nipype.testing import (assert_equal, assert_true, assert_almost_equal,
+                            skipif, utils)
+from nipype.workflows.rsfmri.fsl import resting
+
+import unittest
+import mock
+import nibabel as nb
+import numpy as np
+import os
+
+class TestResting(unittest.TestCase):
+
+    in_filenames = {
+        'in_file': 'rsfmrifunc.nii',
+    }
+
+    out_filenames = {
+        'noise_mask_file': '',
+        'filtered_file': ''
+    }
+
+    def setUp(self):
+        # setup
+        utils.save_toy_nii(self.fake_data, self.in_filenames['in_file'])
+
+    @skipif(True)
+    def test_create_resting_preproc(self):
+        # setup
+        print(np.random.randint(0, 10, (2, 2, 2, 5)))
+        # run
+        wf = resting.create_resting_preproc()
+        wf.run()
+
+        # assert
+
+    def tearDown(self):
+        utils.remove_nii(self.in_filenames.values())
+        utils.remove_nii(self.out_filenames.values())
+
+    fake_data = np.array([[[[2, 4, 3, 9, 1],
+                            [3, 6, 4, 7, 4]],
+
+                           [[8, 3, 4, 6, 2],
+                            [4, 0, 4, 4, 2]]],
+
+                          [[[9, 7, 5, 5, 7],
+                            [7, 8, 4, 8, 4]],
+
+                           [[0, 4, 7, 1, 7],
+                            [6, 8, 8, 8, 7]]]])