add RobustFOV

Author: chrisgorgo

nipype/interfaces/fsl/__init__.py

@@ -16,7 +16,8 @@
                     ImageStats, FilterRegressor, Overlay, Slicer,
                     PlotTimeSeries, PlotMotionParams, ConvertXFM,
                     SwapDimensions, PowerSpectrum, Reorient2Std,
-                    Complex, InvWarp, WarpUtils, ConvertWarp, WarpPoints, WarpPointsToStd)
+                    Complex, InvWarp, WarpUtils, ConvertWarp, WarpPoints, 
+                    WarpPointsToStd, RobustFOV)
 
 from .epi import (PrepareFieldmap, TOPUP, ApplyTOPUP, Eddy, EPIDeWarp,
                   SigLoss, EddyCorrect, EpiReg)

nipype/interfaces/fsl/utils.py

@@ -31,6 +31,24 @@
 warn = warnings.warn
 warnings.filterwarnings('always', category=UserWarning)
 
+class RobustFOVInputSpec(FSLCommandInputSpec):
+    in_file = File(exists=True,
+                   desc='input filename',
+                   argstr='-i %s', position=0, mandatory=True)
+    out_roi = File(desc="ROI volume output name", argstr="-r %s",
+                   name_source=['in_file'], hash_files=False, 
+                   name_template='%s_ROI')
+    
+    
+class RobustFOVOutputSpec(TraitedSpec):
+    out_roi = File(exists=True, desc="ROI volume output name")
+
+
+class RobustFOV(FSLCommand):
+    _cmd = 'robustfov'
+    input_spec = RobustFOVInputSpec
+    output_spec = RobustFOVOutputSpec
+    
 
 class ImageMeantsInputSpec(FSLCommandInputSpec):
     in_file = File(exists=True,