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nipype/interfaces/cat12/preprocess.py

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@@ -638,8 +638,8 @@ class CAT12SANLMDenoisingInputSpec(SPMCommandInputSpec):
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default_value=0.5,
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usedefault=True,
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field="addnoise",
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desc="""Strength of additional noise in noise-free regions.
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Add minimal amount of noise in regions without any noise to avoid image segmentation problems.
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desc="""Strength of additional noise in noise-free regions.
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Add minimal amount of noise in regions without any noise to avoid image segmentation problems.
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This parameter defines the strength of additional noise as percentage of the average signal intensity.""",
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)
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@@ -648,10 +648,10 @@ class CAT12SANLMDenoisingInputSpec(SPMCommandInputSpec):
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field="rician",
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usedefault=True,
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desc="""Rician noise
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MRIs can have Gaussian or Rician distributed noise with uniform or nonuniform variance across the image.
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If SNR is high enough (>3) noise can be well approximated by Gaussian noise in the foreground. However, for
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SENSE reconstruction or DTI data a Rician distribution is expected. Please note that the Rician noise estimation
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is sensitive for large signals in the neighbourhood and can lead to artefacts, e.g. cortex can be affected by
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MRIs can have Gaussian or Rician distributed noise with uniform or nonuniform variance across the image.
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If SNR is high enough (>3) noise can be well approximated by Gaussian noise in the foreground. However, for
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SENSE reconstruction or DTI data a Rician distribution is expected. Please note that the Rician noise estimation
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is sensitive for large signals in the neighbourhood and can lead to artefacts, e.g. cortex can be affected by
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very high values in the scalp or in blood vessels.""",
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)
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@@ -669,11 +669,11 @@ class CAT12SANLMDenoisingInputSpec(SPMCommandInputSpec):
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field="nlmfilter.optimized.NCstr",
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usedefault=True,
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desc="""Strength of Noise Corrections
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Strength of the (sub-resolution) spatial adaptive non local means (SANLM) noise correction. Please note
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that the filter strength is automatically estimated. Change this parameter only for specific conditions. The
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"light" option applies half of the filter strength of the adaptive "medium" cases, whereas the "strong"
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Strength of the (sub-resolution) spatial adaptive non local means (SANLM) noise correction. Please note
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that the filter strength is automatically estimated. Change this parameter only for specific conditions. The
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"light" option applies half of the filter strength of the adaptive "medium" cases, whereas the "strong"
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option uses the full filter strength, force sub-resolution filtering and applies an additional iteration.
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Sub-resolution filtering is only used in case of high image resolution below 0.8 mm or in case of the
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Sub-resolution filtering is only used in case of high image resolution below 0.8 mm or in case of the
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"strong" option. light = 2, medium = -Inf, strong = 4""",
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)
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