add NUMPY_MMAP import

Author: oesteban

examples/dmri_camino_dti.py

@@ -18,14 +18,15 @@
 Import necessary modules from nipype.
 """
 
+import os                                    # system functions
 import nipype.interfaces.io as nio           # Data i/o
 import nipype.interfaces.utility as util     # utility
 import nipype.pipeline.engine as pe          # pypeline engine
 import nipype.interfaces.camino as camino
 import nipype.interfaces.fsl as fsl
 import nipype.interfaces.camino2trackvis as cam2trk
 import nipype.algorithms.misc as misc
-import os                                    # system functions
+from nipype.utils import NUMPY_MMAP
 
 """
 We use the following functions to scrape the voxel and data dimensions of the input images. This allows the

examples/dmri_connectivity.py

@@ -47,6 +47,10 @@
 First, we import the necessary modules from nipype.
 """
 
+import inspect
+
+import os.path as op                      # system functions
+import cmp                                    # connectome mapper
 import nipype.interfaces.io as nio           # Data i/o
 import nipype.interfaces.utility as util     # utility
 import nipype.pipeline.engine as pe          # pypeline engine
@@ -56,10 +60,7 @@
 import nipype.interfaces.freesurfer as fs    # freesurfer
 import nipype.interfaces.cmtk as cmtk
 import nipype.algorithms.misc as misc
-import inspect
-
-import os.path as op                      # system functions
-import cmp                                    # connectome mapper
+from nipype.utils import NUMPY_MMAP
 
 """
 We define the following functions to scrape the voxel and data dimensions of the input images. This allows the

examples/fmri_ants_openfmri.py

@@ -36,6 +36,8 @@
 from nipype.workflows.fmri.fsl import (create_featreg_preproc,
                                        create_modelfit_workflow,
                                        create_fixed_effects_flow)
+from nipype.utils import NUMPY_MMAP
+
 
 config.enable_provenance()
 version = 0

examples/fmri_spm_auditory.py

@@ -28,6 +28,8 @@
 import nipype.pipeline.engine as pe          # pypeline engine
 import nipype.algorithms.modelgen as model   # model specification
 import os                                    # system functions
+from nipype.utils import NUMPY_MMAP
+
 
 """
 

examples/fmri_spm_face.py

@@ -20,13 +20,14 @@
 from __future__ import division
 from builtins import range
 
+import os                                    # system functions
 import nipype.interfaces.io as nio           # Data i/o
 import nipype.interfaces.spm as spm          # spm
 import nipype.interfaces.matlab as mlab      # how to run matlab
 import nipype.interfaces.utility as util     # utility
 import nipype.pipeline.engine as pe          # pypeline engine
 import nipype.algorithms.modelgen as model   # model specification
-import os                                    # system functions
+from nipype.utils import NUMPY_MMAP
 
 """
 

examples/rsfmri_vol_surface_preprocessing.py

@@ -75,6 +75,8 @@
 import numpy as np
 import scipy as sp
 import nibabel as nb
+from nipype.utils import NUMPY_MMAP
+
 
 imports = ['import os',
            'import nibabel as nb',

examples/rsfmri_vol_surface_preprocessing_nipy.py

@@ -75,6 +75,7 @@
 import numpy as np
 import scipy as sp
 import nibabel as nb
+from nipype.utils import NUMPY_MMAP
 
 imports = ['import os',
            'import nibabel as nb',

nipype/algorithms/confounds.py

@@ -16,21 +16,21 @@
 
 import os
 import os.path as op
-from distutils.version import LooseVersion
 
 import nibabel as nb
 import numpy as np
 from numpy.polynomial import Legendre
-from scipy import linalg, signal
+from scipy import linalg
 
 from .. import logging
 from ..external.due import BibTeX
 from ..interfaces.base import (traits, TraitedSpec, BaseInterface,
                                BaseInterfaceInputSpec, File, isdefined,
                                InputMultiPath)
+from nipype.utils import NUMPY_MMAP
+
 IFLOG = logging.getLogger('interface')
 
-NUMPY_MMAP = LooseVersion(np.__version__) >= LooseVersion('1.12.0')
 
 class ComputeDVARSInputSpec(BaseInterfaceInputSpec):
     in_file = File(exists=True, mandatory=True, desc='functional data, after HMC')

nipype/algorithms/icc.py

@@ -8,6 +8,7 @@
 from scipy.linalg import pinv
 from ..interfaces.base import BaseInterfaceInputSpec, TraitedSpec, \
     BaseInterface, traits, File
+from nipype.utils import NUMPY_MMAP
 
 
 class ICCInputSpec(BaseInterfaceInputSpec):

nipype/algorithms/metrics.py

@@ -30,6 +30,8 @@
 from ..interfaces.base import (BaseInterface, traits, TraitedSpec, File,
                                InputMultiPath,
                                BaseInterfaceInputSpec, isdefined)
+from nipype.utils import NUMPY_MMAP
+
 iflogger = logging.getLogger('interface')