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carlohamalainencarlohamalainen
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MINC interface tests.
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‎nipype/interfaces/minc/tests/__init__.py

Whitespace-only changes.

‎nipype/interfaces/minc/tests/test_auto_Average.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..minc2 import Average
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def test_Average_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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avgdim=dict(argstr='-avgdim %s',
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),
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binarize=dict(argstr='-binarize',
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),
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binrange=dict(argstr='-binrange %s %s',
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),
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binvalue=dict(argstr='-binvalue %s',
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),
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check_dimensions=dict(argstr='-check_dimensions',
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xor=('check_dimensions', 'no_check_dimensions'),
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),
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clobber=dict(argstr='-clobber',
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usedefault=True,
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),
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copy_header=dict(argstr='-copy_header',
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xor=('copy_header', 'no_copy_header'),
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),
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debug=dict(argstr='-debug',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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filelist=dict(argstr='-filelist %s',
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mandatory=True,
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xor=('input_files', 'filelist'),
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),
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format_byte=dict(argstr='-byte',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_double=dict(argstr='-double',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_filetype=dict(argstr='-filetype',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_float=dict(argstr='-float',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_int=dict(argstr='-int',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_long=dict(argstr='-long',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_short=dict(argstr='-short',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_signed=dict(argstr='-signed',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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format_unsigned=dict(argstr='-unsigned',
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xor=('format_filetype', 'format_byte', 'format_short', 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'),
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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input_files=dict(argstr='%s',
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exists=True,
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mandatory=True,
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position=-2,
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sep=' ',
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xor=('input_files', 'filelist'),
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),
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max_buffer_size_in_kb=dict(argstr='-max_buffer_size_in_kb %d',
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),
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no_check_dimensions=dict(argstr='-nocheck_dimensions',
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xor=('check_dimensions', 'no_check_dimensions'),
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),
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no_copy_header=dict(argstr='-nocopy_header',
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xor=('copy_header', 'no_copy_header'),
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),
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nonormalize=dict(argstr='-nonormalize',
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xor=('normalize', 'nonormalize'),
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),
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normalize=dict(argstr='-normalize',
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xor=('normalize', 'nonormalize'),
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),
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output_file=dict(argstr='%s',
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genfile=True,
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hash_files=False,
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name_source=['input_files'],
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name_template='%s_averaged.mnc',
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position=-1,
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),
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quiet=dict(argstr='-quiet',
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xor=('verbose', 'quiet'),
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),
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sdfile=dict(argstr='-sdfile %s',
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),
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terminal_output=dict(nohash=True,
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),
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two=dict(argstr='-2',
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),
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verbose=dict(argstr='-verbose',
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xor=('verbose', 'quiet'),
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),
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voxel_range=dict(argstr='-range %d %d',
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),
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weights=dict(argstr='-weights %s',
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sep=',',
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),
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width_weighted=dict(argstr='-width_weighted',
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requires=('avgdim',),
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),
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)
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inputs = Average.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_Average_outputs():
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output_map = dict(output_file=dict(),
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)
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outputs = Average.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/minc/tests/test_auto_BBox.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..minc2 import BBox
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def test_BBox_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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format_minccrop=dict(argstr='-minccrop',
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),
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format_mincresample=dict(argstr='-mincresample',
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),
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format_mincreshape=dict(argstr='-mincreshape',
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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input_file=dict(argstr='%s',
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mandatory=True,
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position=-2,
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),
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one_line=dict(argstr='-one_line',
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xor=('one_line', 'two_lines'),
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),
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out_file=dict(argstr='> %s',
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genfile=True,
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position=-1,
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),
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output_file=dict(hash_files=False,
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keep_extension=False,
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name_source=['input_file'],
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name_template='%s_bbox.txt',
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position=-1,
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),
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terminal_output=dict(nohash=True,
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),
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threshold=dict(argstr='-threshold',
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),
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two_lines=dict(argstr='-two_lines',
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xor=('one_line', 'two_lines'),
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),
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)
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inputs = BBox.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_BBox_outputs():
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output_map = dict(output_file=dict(),
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)
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outputs = BBox.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/minc/tests/test_auto_Beast.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..minc2 import Beast
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def test_Beast_inputs():
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input_map = dict(abspath=dict(argstr='-abspath',
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usedefault=True,
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),
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args=dict(argstr='%s',
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),
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clobber=dict(argstr='-clobber',
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usedefault=True,
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),
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confidence_level_alpha=dict(argstr='-alpha %s',
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),
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configuration_file=dict(argstr='-configuration %s',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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fill_holes=dict(argstr='-fill',
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),
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flip_images=dict(argstr='-flip',
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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input_file=dict(argstr='%s',
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mandatory=True,
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position=-2,
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),
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library_dir=dict(argstr='%s',
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mandatory=True,
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position=-3,
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),
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load_moments=dict(argstr='-load_moments',
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),
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median_filter=dict(argstr='-median',
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),
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nlm_filter=dict(argstr='-nlm_filter',
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),
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number_selected_images=dict(argstr='-selection_num %s',
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),
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output_file=dict(argstr='%s',
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hash_files=False,
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name_source=['input_file'],
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name_template='%s_beast_mask.mnc',
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position=-1,
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),
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patch_size=dict(argstr='-patch_size %s',
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),
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probability_map=dict(argstr='-probability',
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),
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same_resolution=dict(argstr='-same_resolution',
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),
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search_area=dict(argstr='-search_area %s',
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),
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smoothness_factor_beta=dict(argstr='-beta %s',
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),
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terminal_output=dict(nohash=True,
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),
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threshold_patch_selection=dict(argstr='-threshold %s',
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),
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voxel_size=dict(argstr='-voxel_size %s',
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),
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)
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inputs = Beast.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_Beast_outputs():
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output_map = dict(output_file=dict(),
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)
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outputs = Beast.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/minc/tests/test_auto_BestLinReg.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..minc2 import BestLinReg
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def test_BestLinReg_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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clobber=dict(argstr='-clobber',
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usedefault=True,
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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output_mnc=dict(argstr='%s',
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genfile=True,
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hash_files=False,
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keep_extension=False,
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name_source=['source'],
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name_template='%s_bestlinreg.mnc',
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position=-1,
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),
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output_xfm=dict(argstr='%s',
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genfile=True,
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hash_files=False,
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keep_extension=False,
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name_source=['source'],
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name_template='%s_bestlinreg.xfm',
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position=-2,
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),
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source=dict(argstr='%s',
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mandatory=True,
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position=-4,
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),
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target=dict(argstr='%s',
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mandatory=True,
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position=-3,
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),
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terminal_output=dict(nohash=True,
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),
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verbose=dict(argstr='-verbose',
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),
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)
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inputs = BestLinReg.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_BestLinReg_outputs():
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output_map = dict(output_mnc=dict(),
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output_xfm=dict(),
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)
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outputs = BestLinReg.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/minc/tests/test_auto_BigAverage.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..minc2 import BigAverage
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def test_BigAverage_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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clobber=dict(argstr='--clobber',
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usedefault=True,
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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input_files=dict(argstr='%s',
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exists=True,
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mandatory=True,
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position=-2,
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sep=' ',
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),
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output_file=dict(argstr='%s',
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genfile=True,
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hash_files=False,
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name_source=['input_files'],
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name_template='%s_bigaverage.mnc',
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position=-1,
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),
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output_float=dict(argstr='--float',
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),
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robust=dict(argstr='-robust',
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),
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sd_file=dict(argstr='--sdfile %s',
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hash_files=False,
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name_source=['input_files'],
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name_template='%s_bigaverage_stdev.mnc',
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),
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terminal_output=dict(nohash=True,
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),
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tmpdir=dict(argstr='-tmpdir %s',
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),
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verbose=dict(argstr='--verbose',
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),
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)
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inputs = BigAverage.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_BigAverage_outputs():
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output_map = dict(output_file=dict(),
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sd_file=dict(),
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)
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outputs = BigAverage.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

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