DOC: Fix typos found by copdespell

Author: DimitriPapadopoulos

doc/changelog/1.X.X-changelog.rst

@@ -47,8 +47,8 @@ graph nodes might conflict with pydot parsing.
 Bug-fix release in the 1.8.x series.
 
 The previous release vendored ``distutils.version.LooseVersion``, and the vendored objects did not
-preserve compatiblity with the ``distutils`` objects. This release switches to the
-``looseversion`` package that ensures compatiblity.
+preserve compatibility with the ``distutils`` objects. This release switches to the
+``looseversion`` package that ensures compatibility.
 
 
 1.8.0 (May 10, 2022)

doc/devel/cmd_interface_devel.rst

@@ -65,7 +65,7 @@ extra inputs: environ (a dictionary of environmental variables), and args (a
 string defining extra flags). In addition input spec can define the relation
 between the inputs and the generated command line. To achieve this we have
 added two metadata: ``argstr`` (string defining how the argument should be
-formated) and ``position`` (number defining the order of the arguments).
+formatted) and ``position`` (number defining the order of the arguments).
 For example
 
 .. testcode::
@@ -204,7 +204,7 @@ keep_extension (optional)
 
 In addition one can add functionality to your class or base class, to allow
 changing extensions specific to package or interface. This overload function is
-trigerred only if keep_extension is not defined.
+triggered only if keep_extension is not defined.
 
 .. testcode::
 

doc/devel/filename_generation.rst

@@ -148,8 +148,8 @@ case?
     Out[115]: 'bet foo.nii /Users/cburns/tmp/junk/not_bar.nii'
 
 
-In this case we provide ``outfile`` but not as an absolue path, so the
-absolue path is generated and used for the ``cmdline`` when run, but
+In this case we provide ``outfile`` but not as an absolute path, so the
+absolute path is generated and used for the ``cmdline`` when run, but
 ``mybet.inputs.outfile`` is not updated with the absolute path.
 
 .. sourcecode:: ipython

doc/devel/interface_specs.rst

@@ -437,7 +437,7 @@ SPM
 ^^^
 
 ``field``
-	name of the structure refered by the SPM job manager
+	name of the structure referred by the SPM job manager
 
 	**Required:** This metadata is required by all SPM-mediated
 	  interface classes.

doc/devel/matlab_interface_devel.rst

@@ -9,7 +9,7 @@ Example 1
 +++++++++
 
 This is a minimal script for wrapping MATLAB code. You should replace the MATLAB
-code template, and define approriate inputs and outputs.
+code template, and define appropriate inputs and outputs.
 
 .. literalinclude:: matlab_example1.py
 

nipype/algorithms/__init__.py

@@ -4,7 +4,7 @@
 """
 Package contains pure python neuroimaging algorithms
 
-Exaples: artifactdetect
+Examples: artifactdetect
 
 """
 __docformat__ = "restructuredtext"

nipype/algorithms/confounds.py

@@ -1152,7 +1152,7 @@ def is_outlier(points, thresh=3.5):
         a modified z-score (based on the median absolute deviation) greater
         than this value will be classified as outliers.
 
-    :return: A bolean mask, of size numobservations-length array.
+    :return: A boolean mask, of size numobservations-length array.
 
     .. note:: References
 

nipype/algorithms/metrics.py

@@ -42,13 +42,13 @@ class DistanceInputSpec(BaseInterfaceInputSpec):
         "eucl_wmean",
         "eucl_max",
         desc='""eucl_min": Euclidean distance between two closest points\
-        "eucl_cog": mean Euclidian distance between the Center of Gravity\
+        "eucl_cog": mean Euclidean distance between the Center of Gravity\
         of volume1 and CoGs of volume2\
-        "eucl_mean": mean Euclidian minimum distance of all volume2 voxels\
+        "eucl_mean": mean Euclidean minimum distance of all volume2 voxels\
         to volume1\
-        "eucl_wmean": mean Euclidian minimum distance of all volume2 voxels\
+        "eucl_wmean": mean Euclidean minimum distance of all volume2 voxels\
         to volume1 weighted by their values\
-        "eucl_max": maximum over minimum Euclidian distances of all volume2\
+        "eucl_max": maximum over minimum Euclidean distances of all volume2\
         voxels to volume1 (also known as the Hausdorff distance)',
         usedefault=True,
     )

nipype/algorithms/misc.py

@@ -1178,7 +1178,7 @@ def _list_outputs(self):
 
 
 class SplitROIsInputSpec(TraitedSpec):
-    in_file = File(exists=True, mandatory=True, desc="file to be splitted")
+    in_file = File(exists=True, mandatory=True, desc="file to be split")
     in_mask = File(exists=True, desc="only process files inside mask")
     roi_size = traits.Tuple(traits.Int, traits.Int, traits.Int, desc="desired ROI size")
 

nipype/algorithms/rapidart.py

@@ -38,7 +38,7 @@
 def _get_affine_matrix(params, source):
     """Return affine matrix given a set of translation and rotation parameters
 
-    params : np.array (upto 12 long) in native package format
+    params : np.array (up to 12 long) in native package format
     source : the package that generated the parameters
              supports SPM, AFNI, FSFAST, FSL, NIPY
     """