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extend noise mask to number of time steps (ammend)
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nipype/interfaces/dipy/preprocess.py

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -230,7 +230,10 @@ def nlmeans_proxy(in_file, settings,
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nmask = data[..., 0] > 80
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if noise_mask is not None:
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nmask = np.array([noise_mask] * data.shape[-1])
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nmask = nb.load(noise_mask).get_data()
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if nmask.ndim != data.ndim:
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nmask = np.array([nmask] * data.shape[-1])
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nmask[nmask > 0] = 1
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sigma = np.std(data[nmask == 1])

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