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Commit 78060b8

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author
Erik
committed
Fix for output_name in MRtrix streamtrack
1 parent 872720a commit 78060b8

5 files changed

+5
-5
lines changed

nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -79,7 +79,7 @@ def test_DiffusionTensorStreamlineTrack_inputs():
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out_file=dict(argstr='%s',
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name_source=['in_file'],
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name_template='%s_tracked.tck',
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output_name='tracked.tck',
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output_name='tracked',
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position=-1,
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),
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seed_file=dict(argstr='-seed %s',

nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -77,7 +77,7 @@ def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_inputs():
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out_file=dict(argstr='%s',
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name_source=['in_file'],
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name_template='%s_tracked.tck',
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output_name='tracked.tck',
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output_name='tracked',
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position=-1,
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),
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seed_file=dict(argstr='-seed %s',

nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -75,7 +75,7 @@ def test_SphericallyDeconvolutedStreamlineTrack_inputs():
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out_file=dict(argstr='%s',
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name_source=['in_file'],
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name_template='%s_tracked.tck',
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output_name='tracked.tck',
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output_name='tracked',
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position=-1,
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),
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seed_file=dict(argstr='-seed %s',

nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -75,7 +75,7 @@ def test_StreamlineTrack_inputs():
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out_file=dict(argstr='%s',
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name_source=['in_file'],
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name_template='%s_tracked.tck',
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output_name='tracked.tck',
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output_name='tracked',
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position=-1,
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),
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seed_file=dict(argstr='-seed %s',

nipype/interfaces/mrtrix/tracking.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -128,7 +128,7 @@ class StreamlineTrackInputSpec(CommandLineInputSpec):
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initial_direction = traits.List(traits.Int, desc='Specify the initial tracking direction as a vector',
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argstr='-initdirection %s', minlen=2, maxlen=2, units='voxels')
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out_file = File(argstr='%s', position= -1, name_source = ['in_file'], name_template='%s_tracked.tck',
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output_name='tracked.tck', desc='output data file')
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output_name='tracked', desc='output data file')
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class StreamlineTrackOutputSpec(TraitedSpec):
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tracked = File(exists=True, desc='output file containing reconstructed tracts')

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