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Fix doctests for general workflow
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nipype/workflows/dmri/fsl/artifacts.py

Lines changed: 2 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -12,12 +12,7 @@
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from .utils import *
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def all_fmb_pipeline(name='hmc_sdc_ecc',
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fugue_params=dict(smooth3d=2.0),
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bmap_params=dict(delta_te=2.46e-3),
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epi_params=dict(echospacing=0.77e-3,
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acc_factor=3,
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enc_dir='y-')):
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def all_fmb_pipeline(name='hmc_sdc_ecc', fugue_params=dict(smooth3d=2.0)):
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"""
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Builds a pipeline including three artifact corrections: head-motion
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correction (HMC), susceptibility-derived distortion correction (SDC),
@@ -62,8 +57,7 @@ def all_fmb_pipeline(name='hmc_sdc_ecc',
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name='bet_dwi_post')
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hmc = hmc_pipeline()
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sdc = sdc_fmb(fugue_params=fugue_params, bmap_params=bmap_params,
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epi_params=epi_params)
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sdc = sdc_fmb(fugue_params=fugue_params)
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ecc = ecc_pipeline()
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unwarp = apply_all_corrections()
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