Add to init.

Author: tsalo

nipype/interfaces/freesurfer/__init__.py

@@ -21,7 +21,7 @@
                     MRIFill, MRIsInflate, Sphere, FixTopology, EulerNumber,
                     RemoveIntersection, MakeSurfaces, Curvature, CurvatureStats,
                     Jacobian, MRIsCalc, VolumeMask, ParcellationStats, Contrast,
-                    RelabelHypointensities, Aparc2Aseg, Apas2Aseg, MRIsExpand)
+                    RelabelHypointensities, Aparc2Aseg, Apas2Aseg, MRIsExpand, MRIsCombine)
 from .longitudinal import (RobustTemplate, FuseSegmentations)
 from .registration import (MPRtoMNI305, RegisterAVItoTalairach, EMRegister, Register,
                            Paint)

nipype/interfaces/freesurfer/tests/test_auto_MRIsCombine.py

@@ -14,11 +14,11 @@ def test_MRIsCombine_inputs():
     ),
     in_file1=dict(argstr='--combinesurfs %s',
     mandatory=True,
-    position=0,
+    position=1,
     ),
     in_file2=dict(argstr='%s',
     mandatory=True,
-    position=1,
+    position=2,
     ),
     out_file=dict(argstr='%s',
     genfile=True,

nipype/interfaces/freesurfer/utils.py

@@ -958,10 +958,10 @@ class MRIsCombineInputSpec(FSTraitedSpec):
     """
     Uses Freesurfer's mris_convert to combine two surface files into one.
     """
-    in_file1 = File(exists=True, mandatory=True, position=0,
+    in_file1 = File(exists=True, mandatory=True, position=1,
                     argstr='--combinesurfs %s',
                     desc='File to be combined with in_file2')
-    in_file2 = File(exists=True, mandatory=True, position=1,
+    in_file2 = File(exists=True, mandatory=True, position=2,
                     argstr='%s',
                     desc='File to be combined with in_file1')
     out_file = File(argstr='%s', position=-1, genfile=True,