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Revert "fixed doctests"
This reverts commit 552fed3.
1 parent 98e475c commit 8243c31

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nipype/interfaces/afni/preprocess.py

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -140,7 +140,7 @@ class TShift(AFNICommand):
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>>> tshift.inputs.tpattern = 'alt+z'
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>>> tshift.inputs.tzero = 0.0
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>>> tshift.cmdline #doctest:
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'3dTshift -prefix ./functional_tshift -tpattern alt+z -tzero 0.0 functional.nii'
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'3dTshift -prefix functional_tshift -tpattern alt+z -tzero 0.0 functional.nii'
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>>> res = tshift.run() # doctest: +SKIP
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"""
@@ -303,7 +303,7 @@ class Resample(AFNICommand):
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>>> resample.inputs.orientation= 'RPI'
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>>> resample.inputs.outputtype = "NIFTI"
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>>> resample.cmdline
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'3dresample -orient RPI -prefix ./functional_resample.nii -inset functional.nii'
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'3dresample -orient RPI -prefix functional_resample.nii -inset functional.nii'
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>>> res = resample.run() # doctest: +SKIP
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"""
@@ -438,7 +438,7 @@ class Detrend(AFNICommand):
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>>> detrend.inputs.args = '-polort 2'
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>>> detrend.inputs.outputtype = "AFNI"
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>>> detrend.cmdline
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'3dDetrend -polort 2 -prefix ./functional_detrend functional.nii'
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'3dDetrend -polort 2 -prefix functional_detrend functional.nii'
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>>> res = detrend.run() # doctest: +SKIP
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"""
@@ -472,7 +472,7 @@ class Despike(AFNICommand):
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>>> despike = afni.Despike()
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>>> despike.inputs.in_file = 'functional.nii'
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>>> despike.cmdline
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'3dDespike -prefix ./functional_despike functional.nii'
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'3dDespike -prefix functional_despike functional.nii'
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>>> res = despike.run() # doctest: +SKIP
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"""
@@ -531,7 +531,7 @@ class Automask(AFNICommand):
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>>> automask.inputs.dilate = 1
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>>> automask.inputs.outputtype = "NIFTI"
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>>> automask.cmdline #doctest: +ELLIPSIS
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'3dAutomask -apply_prefix ./functional_masked.nii -dilate 1 -prefix ./functional_mask.nii functional.nii'
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'3dAutomask -apply_prefix functional_masked.nii -dilate 1 -prefix functional_mask.nii functional.nii'
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>>> res = automask.run() # doctest: +SKIP
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"""
@@ -596,7 +596,7 @@ class Volreg(AFNICommand):
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>>> volreg.inputs.zpad = 4
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>>> volreg.inputs.outputtype = "NIFTI"
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>>> volreg.cmdline #doctest: +ELLIPSIS
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'3dvolreg -Fourier -twopass -1Dfile functional.1D -prefix ./functional_volreg.nii -zpad 4 -maxdisp1D functional_md.1D functional.nii'
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'3dvolreg -Fourier -twopass -1Dfile functional.1D -prefix functional_volreg.nii -zpad 4 -maxdisp1D functional_md.1D functional.nii'
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>>> res = volreg.run() # doctest: +SKIP
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"""
@@ -1634,7 +1634,7 @@ class BlurInMask(AFNICommand):
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>>> bim.inputs.mask = 'mask.nii'
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>>> bim.inputs.fwhm = 5.0
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>>> bim.cmdline #doctest: +ELLIPSIS
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'3dBlurInMask -input functional.nii -FWHM 5.000000 -mask mask.nii -prefix ./functional_blur'
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'3dBlurInMask -input functional.nii -FWHM 5.000000 -mask mask.nii -prefix functional_blur'
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>>> res = bim.run() # doctest: +SKIP
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"""

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