fix tests

Author: oesteban

nipype/interfaces/mrtrix3/preprocess.py

@@ -102,11 +102,11 @@ class ResponseSD(CommandLine):
 
     >>> import nipype.interfaces.mrtrix3 as mrt
     >>> resp = mrt.ResponseSD()
-    >>> resp.inputs.in_file = 'dwi.nii.gz'
+    >>> resp.inputs.in_file = 'dwi.mif'
     >>> resp.inputs.in_mask = 'mask.nii.gz'
     >>> resp.inputs.grad_fsl = ('bvecs', 'bvals')
     >>> resp.cmdline                               # doctest: +ELLIPSIS
-    ''
+    'dwi2response -fslgrad bvecs bvals -mask mask.nii.gz dwi.mif'
     >>> resp.run()                                 # doctest: +SKIP
     """
 

nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py

@@ -0,0 +1,46 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from nipype.testing import assert_equal
+from nipype.interfaces.mrtrix3.utils import Mesh2PVE
+
+def test_Mesh2PVE_inputs():
+    input_map = dict(args=dict(argstr='%s',
+    ),
+    environ=dict(nohash=True,
+    usedefault=True,
+    ),
+    ignore_exception=dict(nohash=True,
+    usedefault=True,
+    ),
+    in_file=dict(argstr='%s',
+    mandatory=True,
+    position=-3,
+    ),
+    in_first=dict(argstr='-first %s',
+    ),
+    out_file=dict(argstr='%s',
+    mandatory=True,
+    position=-1,
+    usedefault=True,
+    ),
+    reference=dict(argstr='%s',
+    mandatory=True,
+    position=-2,
+    ),
+    terminal_output=dict(nohash=True,
+    ),
+    )
+    inputs = Mesh2PVE.input_spec()
+
+    for key, metadata in input_map.items():
+        for metakey, value in metadata.items():
+            yield assert_equal, getattr(inputs.traits()[key], metakey), value
+
+def test_Mesh2PVE_outputs():
+    output_map = dict(out_file=dict(),
+    )
+    outputs = Mesh2PVE.output_spec()
+
+    for key, metadata in output_map.items():
+        for metakey, value in metadata.items():
+            yield assert_equal, getattr(outputs.traits()[key], metakey), value
+

nipype/interfaces/mrtrix3/tracking.py

@@ -131,7 +131,7 @@ class Tractography(CommandLine):
     >>> tk.cmdline                               # doctest: +ELLIPSIS
     'tckgen -algorithm iFOD2 -include mask.nii.gz \
 -seed_sphere 80.000000,100.000000,70.000000,10.000000 \
-./fods.nii.gz tracked.tck'
+./fods.mif tracked.tck'
     >>> tk.run()                                 # doctest: +SKIP
     """
 

nipype/interfaces/mrtrix3/utils.py

@@ -49,11 +49,11 @@ class Mesh2PVE(CommandLine):
 
     >>> import nipype.interfaces.mrtrix3 as mrt
     >>> m2p = mrt.Mesh2PVE()
-    >>> m2p.inputs.in_file = 'surf.vtk'
-    >>> m2p.inputs.reference = 'dwi.nii.gz'
+    >>> m2p.inputs.in_file = 'surf1.vtk'
+    >>> m2p.inputs.reference = 'dwi.mif'
     >>> m2p.inputs.in_first = 'T1.nii.gz'
     >>> m2p.cmdline                               # doctest: +ELLIPSIS
-    'mesh2pve -first T1.nii.gz surf.vtk dwi.nii.gz mesh2volume.nii.gz'
+    'mesh2pve -first T1.nii.gz surf1.vtk dwi.mif mesh2volume.nii.gz'
     >>> resp.run()                                 # doctest: +SKIP
     """