fix: to have recon-all work with 5.3 on OSX

Author: satra

nipype/interfaces/freesurfer/utils.py

@@ -1668,7 +1668,6 @@ class SphereInputSpec(FSTraitedSpecOpenMP):
     seed = traits.Int(argstr="-seed %d",
                       desc="Seed for setting random number generator")
     magic = traits.Bool(argstr="-q",
-                        requires=['in_smoothwm'],
                         desc="No documentation. Direct questions to [email protected]")
     in_smoothwm = File( exists=True, copyfile=True,
                        desc="Input surface required when -q flag is not selected")

nipype/workflows/smri/freesurfer/autorecon3.py

@@ -1,4 +1,4 @@
-from nipype.interfaces.utility import IdentityInterface, Merge
+from nipype.interfaces.utility import IdentityInterface, Merge, Function
 import nipype.pipeline.engine as pe  # pypeline engine
 from nipype.interfaces.freesurfer import *
 from .ba_maps import create_ba_maps_wf

nipype/workflows/smri/freesurfer/recon.py

@@ -84,9 +84,8 @@ def create_reconall_workflow(name="ReconAll", plugin_args=None):
 
     Example
     -------
-    >>> from nipype.workflows.smri.freesurfer import create_skullstripped_recon_flow
-    >>> import nipype.interfaces.freesurfer as fs
-    >>> recon_all = create_skullstripped_recon_flow()
+    >>> from nipype.workflows.smri.freesurfer import create_reconall_workflow
+    >>> recon_all = create_reconall_flow()
     >>> recon_all.inputs.inputspec.subject_id = 'subj1'
     >>> recon_all.inputs.inputspec.subjects_dir = '.'
     >>> recon_all.inputs.inputspec.T1_files = 'T1.nii.gz'