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Commit 8ef725b

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bpinsard
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Merge branch 'master' into fsl_warputils
* master: (21 commits) Fixed error in _rotate_bvec that was adding an extra entry to the output rotated_bvecs file and offsetting the correction by one volume. add Bandpass to init homogenize name function accross interfaces fixing for new gen_filename autopep8 autopep8 few interfaces added, pep8 add min version for bbr options pep8 doctest Modified create_dmri_preprocessing to allow for pipeline use with and without fieldmap files - Added use_fieldmap flag to create_dmri_preprocessing fixes inverse deformation field typo adding fsl6 options (bbr) fixing ApplyInverseDeformationOutputSpec bug Revert "simplify in_file" simplify in_file merge mock changes trailing comma fix ...
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nipype/interfaces/afni/__init__.py

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from .preprocess import (To3D, Refit, Resample, TStat, Automask, Volreg, Merge,
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ZCutUp, Calc, TShift, Warp, Detrend, Despike, Copy,
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Fourier, Allineate, Maskave, SkullStrip, TCat, Fim,
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TCorrelate, BrickStat, ROIStats, AutoTcorrelate)
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TCorrelate, BrickStat, ROIStats, AutoTcorrelate,
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BlurInMask, Autobox, TCorrMap, Bandpass)

nipype/interfaces/afni/base.py

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@@ -135,7 +135,7 @@ def _output_update(self):
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self._outputtype = self.inputs.outputtype
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@classmethod
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def set_default_outputtype(cls, outputtype):
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def set_default_output_type(cls, outputtype):
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"""Set the default output type for AFNI classes.
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This method is used to set the default output type for all afni

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