@@ -1142,42 +1142,6 @@ def _gen_filename(self, name):
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return None
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- class EPIDeWarpInputSpec (FSLCommandInputSpec ):
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-
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- mag_file = File (exists = True ,
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- desc = 'Magnitude file' ,
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- argstr = '--mag %s' , position = 0 , mandatory = True )
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- dph_file = File (exists = True ,
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- desc = 'Phase file assumed to be scaled from 0 to 4095' ,
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- argstr = '--dph %s' , mandatory = True )
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- exf_file = File (exists = True ,
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- desc = 'example func volume (or use epi)' ,
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- argstr = '--exf %s' , mandatory = False )
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- epi_file = File (exists = True ,
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- desc = 'EPI volume to unwarp' ,
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- argstr = '--epi %s' , mandatory = False )
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- tediff = traits .Float (2.46 , usedefault = True ,
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- desc = 'difference in B0 field map TEs' ,
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- argstr = '--tediff %s' )
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- esp = traits .Float (0.58 , desc = 'EPI echo spacing' ,
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- argstr = '--esp %s' , usedefault = True )
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- sigma = traits .Int (2 , usedefault = True , argstr = '--sigma %s' ,
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- desc = "2D spatial gaussing smoothing \
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- stdev (default = 2mm)" )
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- vsm = traits .String (genfile = True , desc = 'voxel shift map' ,
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- argstr = '--vsm %s' )
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- exfdw = traits .String (desc = 'dewarped example func volume' , genfile = True ,
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- argstr = '--exfdw %s' )
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- epidw = traits .String (desc = 'dewarped epi volume' , genfile = False ,
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- argstr = '--epidw %s' )
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- tmpdir = traits .String (genfile = True , desc = 'tmpdir' ,
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- argstr = '--tmpdir %s' )
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- nocleanup = traits .Bool (True , usedefault = True , desc = 'no cleanup' ,
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- argstr = '--nocleanup' )
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- cleanup = traits .Bool (desc = 'cleanup' ,
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- argstr = '--cleanup' )
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-
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-
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class SigLossInputSpec (FSLCommandInputSpec ):
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in_file = File (mandatory = True ,
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exists = True ,
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