|
12 | 12 | before_install:
|
13 | 13 | - function bef_inst {
|
14 | 14 | wget http://repo.continuum.io/miniconda/Miniconda${TRAVIS_PYTHON_VERSION:0:1}-latest-Linux-x86_64.sh
|
15 |
| - -O /home/travis/.cache/miniconda.sh; |
16 |
| - bash /home/travis/.cache/miniconda.sh -b -p /home/travis/miniconda; |
17 |
| - export PATH=/home/travis/miniconda/bin:$PATH ; |
18 |
| - if $INSTALL_DEB_DEPENDECIES; then sudo rm -rf /dev/shm; fi; |
19 |
| - if $INSTALL_DEB_DEPENDECIES; then sudo ln -s /run/shm /dev/shm; fi; |
20 |
| - bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh); |
21 |
| - sudo apt-get -y update; |
22 |
| - sudo apt-get -y install xvfb fusefat; |
| 15 | + -O /home/travis/.cache/miniconda.sh && |
| 16 | + bash /home/travis/.cache/miniconda.sh -b -p /home/travis/miniconda && |
| 17 | + export PATH=/home/travis/miniconda/bin:$PATH && |
| 18 | + if $INSTALL_DEB_DEPENDECIES; then sudo rm -rf /dev/shm; fi && |
| 19 | + if $INSTALL_DEB_DEPENDECIES; then sudo ln -s /run/shm /dev/shm; fi && |
| 20 | + bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh) && |
| 21 | + sudo apt-get -y update && |
| 22 | + sudo apt-get -y install xvfb fusefat && |
23 | 23 | if $INSTALL_DEB_DEPENDECIES; then travis_retry sudo apt-get install -y -qq
|
24 |
| - fsl afni elastix fsl-atlases; fi; |
| 24 | + fsl afni elastix fsl-atlases; fi && |
25 | 25 | if $INSTALL_DEB_DEPENDECIES; then
|
26 | 26 | source /etc/fsl/fsl.sh;
|
27 |
| - source /etc/afni/afni.sh; fi; |
| 27 | + source /etc/afni/afni.sh; fi && |
28 | 28 | export FSLOUTPUTTYPE=NIFTI_GZ; }
|
29 | 29 | - travis_retry bef_inst
|
30 | 30 | install:
|
31 | 31 | - function inst {
|
32 |
| - conda config --add channels conda-forge ; |
33 |
| - conda update --yes conda ; |
34 |
| - conda update --all -y python=$TRAVIS_PYTHON_VERSION ; |
35 |
| - conda install -y nipype matplotlib nitime ; |
36 |
| - pip install python-coveralls coverage doctest-ignore-unicode ; |
37 |
| - if [ ! -z "$DUECREDIT_ENABLE"]; then pip install duecredit; fi ; |
38 |
| - rm -r /home/travis/miniconda/lib/python${TRAVIS_PYTHON_VERSION}/site-packages/nipype* ; |
39 |
| - pip install -r requirements.txt ; |
40 |
| - pip install -e . ; |
41 |
| - export COVERAGE_PROCESS_START=$(pwd)/.coveragerc ; |
42 |
| - export COVERAGE_DATA_FILE=$(pwd)/.coverage ; |
43 |
| - echo "data_file = ${COVERAGE_DATA_FILE}" >> ${COVERAGE_PROCESS_START} ; } |
| 32 | + conda config --add channels conda-forge && |
| 33 | + conda update --yes conda && |
| 34 | + conda update --all -y python=$TRAVIS_PYTHON_VERSION && |
| 35 | + conda install -y nipype matplotlib nitime && |
| 36 | + pip install python-coveralls coverage doctest-ignore-unicode && |
| 37 | + if [ ! -z "$DUECREDIT_ENABLE"]; then pip install duecredit; fi && |
| 38 | + rm -r /home/travis/miniconda/lib/python${TRAVIS_PYTHON_VERSION}/site-packages/nipype* && |
| 39 | + pip install -r requirements.txt && |
| 40 | + pip install -e . && |
| 41 | + export COVERAGE_PROCESS_START=$(pwd)/.coveragerc && |
| 42 | + export COVERAGE_DATA_FILE=$(pwd)/.coverage && |
| 43 | + echo "data_file = ${COVERAGE_DATA_FILE}" >> ${COVERAGE_PROCESS_START}; } |
44 | 44 | - travis_retry inst
|
45 | 45 | script:
|
46 | 46 | - python -W once:FSL:UserWarning:nipype `which nosetests` --with-doctest --with-doctest-ignore-unicode --with-cov --cover-package nipype --logging-level=DEBUG --verbosity=3
|
|
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