@@ -407,15 +407,15 @@ class GLMFitInputSpec(FSTraitedSpec):
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desc = "Reference time activity curve and frame times" ,
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)
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mrtm2 = InputMultiPath (
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- traits .Tuple (File (exists = True ), File (exists = True ), traits .Float ),
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+ traits .Tuple (File (exists = True ), File (exists = True ), traits .Float ),
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argstr = "--mrtm2 %s %s %f..." ,
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- desc = "Reference time activity curve, frame times and k2p" ,
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+ desc = "Reference time activity curve, frame times and k2p" ,
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)
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logan = InputMultiPath (
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- traits .Tuple (File (exists = True ), File (exists = True ), traits .Float ),
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+ traits .Tuple (File (exists = True ), File (exists = True ), traits .Float ),
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argstr = "--logan %s %s %f..." ,
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- desc = "Reference time activity curve, frame times and tstar" ,
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- )
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+ desc = "Reference time activity curve, frame times and tstar" ,
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+ )
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force_perm = traits .Bool (
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argstr = "--perm-force" ,
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desc = "force perumtation test, even when design matrix is not orthog" ,
@@ -443,6 +443,7 @@ class GLMFitInputSpec(FSTraitedSpec):
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desc = 'save outputs as nii.gz' ,
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)
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+
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class GLMFitOutputSpec (TraitedSpec ):
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glm_dir = Directory (exists = True , desc = "output directory" )
@@ -462,7 +463,7 @@ class GLMFitOutputSpec(TraitedSpec):
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frame_eigenvectors = File (desc = "matrix of frame eigenvectors from residual PCA" )
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singular_values = File (desc = "matrix singular values from residual PCA" )
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svd_stats_file = File (desc = "text file summarizing the residual PCA" )
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-
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+
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class GLMFit (FSCommand ):
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"""Use FreeSurfer's mri_glmfit to specify and estimate a general linear model.
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