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Revert "after make specs"
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‎nipype/interfaces/ants/tests/test_auto_Registration.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from __future__ import unicode_literals
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from ..registration import Registration
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def test_Registration_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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collapse_output_transforms=dict(argstr='--collapse-output-transforms %d',
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usedefault=True,
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),
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convergence_threshold=dict(requires=['number_of_iterations'],
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usedefault=True,
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),
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convergence_window_size=dict(requires=['convergence_threshold'],
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usedefault=True,
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),
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dimension=dict(argstr='--dimensionality %d',
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usedefault=True,
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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fixed_image=dict(mandatory=True,
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),
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fixed_image_mask=dict(argstr='%s',
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max_ver='2.1.0',
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xor=['fixed_image_masks'],
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),
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fixed_image_masks=dict(min_ver='2.2.0',
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xor=['fixed_image_mask'],
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),
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float=dict(argstr='--float %d',
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),
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ignore_exception=dict(deprecated='1.0.0',
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nohash=True,
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usedefault=True,
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),
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initial_moving_transform=dict(argstr='%s',
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exists=True,
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xor=['initial_moving_transform_com'],
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),
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initial_moving_transform_com=dict(argstr='%s',
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xor=['initial_moving_transform'],
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),
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initialize_transforms_per_stage=dict(argstr='--initialize-transforms-per-stage %d',
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usedefault=True,
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),
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interpolation=dict(argstr='%s',
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usedefault=True,
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),
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interpolation_parameters=dict(),
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invert_initial_moving_transform=dict(requires=['initial_moving_transform'],
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xor=['initial_moving_transform_com'],
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),
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metric=dict(mandatory=True,
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),
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metric_item_trait=dict(),
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metric_stage_trait=dict(),
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metric_weight=dict(mandatory=True,
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requires=['metric'],
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usedefault=True,
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),
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metric_weight_item_trait=dict(),
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metric_weight_stage_trait=dict(),
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moving_image=dict(mandatory=True,
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),
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moving_image_mask=dict(max_ver='2.1.0',
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requires=['fixed_image_mask'],
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xor=['moving_image_masks'],
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),
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moving_image_masks=dict(min_ver='2.2.0',
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xor=['moving_image_mask'],
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),
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num_threads=dict(nohash=True,
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usedefault=True,
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),
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number_of_iterations=dict(),
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output_inverse_warped_image=dict(hash_files=False,
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requires=['output_warped_image'],
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),
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output_transform_prefix=dict(argstr='%s',
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usedefault=True,
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),
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output_warped_image=dict(hash_files=False,
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),
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radius_bins_item_trait=dict(),
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radius_bins_stage_trait=dict(),
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radius_or_number_of_bins=dict(requires=['metric_weight'],
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usedefault=True,
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),
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restore_state=dict(argstr='--restore-state %s',
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),
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restrict_deformation=dict(),
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sampling_percentage=dict(requires=['sampling_strategy'],
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),
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sampling_percentage_item_trait=dict(),
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sampling_percentage_stage_trait=dict(),
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sampling_strategy=dict(requires=['metric_weight'],
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),
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sampling_strategy_item_trait=dict(),
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sampling_strategy_stage_trait=dict(),
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save_state=dict(argstr='--save-state %s',
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),
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shrink_factors=dict(mandatory=True,
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),
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sigma_units=dict(requires=['smoothing_sigmas'],
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),
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smoothing_sigmas=dict(mandatory=True,
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),
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terminal_output=dict(deprecated='1.0.0',
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nohash=True,
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),
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transform_parameters=dict(),
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transforms=dict(argstr='%s',
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mandatory=True,
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),
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use_estimate_learning_rate_once=dict(),
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use_histogram_matching=dict(usedefault=True,
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),
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verbose=dict(argstr='-v',
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),
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winsorize_lower_quantile=dict(argstr='%s',
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usedefault=True,
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),
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winsorize_upper_quantile=dict(argstr='%s',
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usedefault=True,
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),
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write_composite_transform=dict(argstr='--write-composite-transform %d',
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usedefault=True,
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),
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)
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inputs = Registration.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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assert getattr(inputs.traits()[key], metakey) == value
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def test_Registration_outputs():
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output_map = dict(composite_transform=dict(),
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elapsed_time=dict(),
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forward_invert_flags=dict(),
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forward_transforms=dict(),
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inverse_composite_transform=dict(),
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inverse_warped_image=dict(),
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metric_value=dict(),
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reverse_invert_flags=dict(),
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reverse_transforms=dict(),
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save_state=dict(),
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warped_image=dict(),
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)
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outputs = Registration.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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assert getattr(outputs.traits()[key], metakey) == value

‎nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from __future__ import unicode_literals
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from ..patchmatch import PatchMatch
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def test_PatchMatch_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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cs_size=dict(argstr='-cs %i',
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),
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database_file=dict(argstr='-db %s',
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mandatory=True,
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position=3,
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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ignore_exception=dict(deprecated='1.0.0',
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nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='-i %s',
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mandatory=True,
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position=1,
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),
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it_num=dict(argstr='-it %i',
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),
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mask_file=dict(argstr='-m %s',
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mandatory=True,
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position=2,
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),
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match_num=dict(argstr='-match %i',
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),
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out_file=dict(argstr='-o %s',
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name_source=['in_file'],
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name_template='%s_pm.nii.gz',
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position=4,
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),
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patch_size=dict(argstr='-size %i',
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),
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pm_num=dict(argstr='-pm %i',
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),
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terminal_output=dict(deprecated='1.0.0',
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nohash=True,
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),
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)
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inputs = PatchMatch.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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assert getattr(inputs.traits()[key], metakey) == value
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def test_PatchMatch_outputs():
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output_map = dict(out_file=dict(),
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)
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outputs = PatchMatch.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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assert getattr(outputs.traits()[key], metakey) == value

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