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fix: remove other changed file
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nipype/interfaces/mrtrix/convert.py

Lines changed: 4 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -10,7 +10,7 @@
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"""
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from __future__ import print_function, division, unicode_literals, absolute_import
13-
from io import open
13+
from builtins import open
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import os.path as op
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import nibabel as nb
@@ -55,11 +55,10 @@ def read_mrtrix_tracks(in_file, as_generator=True):
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def read_mrtrix_header(in_file):
58-
fileobj = open(in_file, 'rb')
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fileobj = open(in_file, 'r')
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header = {}
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iflogger.info('Reading header data...')
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for line in fileobj:
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line = line.decode()
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if line == 'END\n':
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iflogger.info('Reached the end of the header!')
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break
@@ -79,7 +78,7 @@ def read_mrtrix_header(in_file):
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def read_mrtrix_streamlines(in_file, header, as_generator=True):
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offset = header['offset']
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stream_count = header['count']
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fileobj = open(in_file, 'rb')
81+
fileobj = open(in_file, 'r')
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fileobj.seek(offset)
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endianness = native_code
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f4dt = np.dtype(endianness + 'f4')
@@ -91,7 +90,7 @@ def points_per_track(offset):
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n_points = 0
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track_points = []
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iflogger.info('Identifying the number of points per tract...')
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all_str = fileobj.read().decode()
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all_str = fileobj.read()
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num_triplets = int(len(all_str) / bytesize)
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pts = np.ndarray(shape=(num_triplets, pt_cols), dtype='f4', buffer=all_str)
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nonfinite_list = np.where(np.isfinite(pts[:, 2]) == False)

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