FIX: PEP8 - E125 continuation line with same indent as next logical line

Author: miykael

examples/fmri_ants_openfmri.py

@@ -45,7 +45,7 @@
 
 version = 0
 if fsl.Info.version() and \
-    LooseVersion(fsl.Info.version()) > LooseVersion('5.0.6'):
+        LooseVersion(fsl.Info.version()) > LooseVersion('5.0.6'):
     version = 507
 
 fsl.FSLCommand.set_default_output_type('NIFTI_GZ')

nipype/interfaces/io.py

@@ -1156,8 +1156,8 @@ def _run_interface(self, runtime):
                         full_path = os.path.join(curr_dir, infile)
                         self._match_path(full_path)
         if (self.inputs.unpack_single and
-            len(self.result['out_paths']) == 1
-            ):
+                len(self.result['out_paths']) == 1
+                ):
             for key, vals in self.result.items():
                 self.result[key] = vals[0]
         else:

nipype/pipeline/engine.py

@@ -1822,7 +1822,7 @@ class JoinNode(Node):
     """
 
     def __init__(self, interface, name, joinsource, joinfield=None,
-        unique=False, **kwargs):
+            unique=False, **kwargs):
         """
 
         Parameters

nipype/pipeline/plugins/base.py

@@ -372,11 +372,11 @@ def _send_procs_to_workers(self, updatehash=False, graph=None):
                                 jobid].hash_exists()
                             logger.debug('Hash exists %s' % str(hash_exists))
                             if (hash_exists and
-                                 (self.procs[jobid].overwrite == False or
-                                   (self.procs[jobid].overwrite == None and
-                                    not self.procs[jobid]._interface.always_run)
-                                  )
-                                ):
+                                     (self.procs[jobid].overwrite == False or
+                                       (self.procs[jobid].overwrite == None and
+                                        not self.procs[jobid]._interface.always_run)
+                                      )
+                                    ):
                                 continue_with_submission = False
                                 self._task_finished_cb(jobid)
                                 self._remove_node_dirs()

nipype/pipeline/plugins/dagman.py

@@ -75,8 +75,8 @@ def __init__(self, **kwargs):
              ('_block', 'block', False),
              ('_dagman_args', 'dagman_args', '')):
             if 'plugin_args' in kwargs \
-                and not kwargs['plugin_args'] is None \
-                and id_ in kwargs['plugin_args']:
+                    and not kwargs['plugin_args'] is None \
+                    and id_ in kwargs['plugin_args']:
                     if id_ == 'wrapper_cmd':
                         val = os.path.abspath(kwargs['plugin_args'][id_])
                     elif id_ == 'block':
@@ -86,7 +86,7 @@ def __init__(self, **kwargs):
             setattr(self, var, val)
         # TODO remove after some time
         if 'plugin_args' in kwargs \
-            and not kwargs['plugin_args'] is None:
+                and not kwargs['plugin_args'] is None:
             plugin_args = kwargs['plugin_args']
             if 'template' in plugin_args:
                 warn("the 'template' argument is deprecated, use 'initial_specs' instead")

nipype/pipeline/plugins/debug.py

@@ -13,7 +13,7 @@ class DebugPlugin(PluginBase):
     def __init__(self, plugin_args=None):
         super(DebugPlugin, self).__init__(plugin_args=plugin_args)
         if plugin_args and "callable" in plugin_args and \
-            hasattr(plugin_args['callable'], '__call__'):
+                hasattr(plugin_args['callable'], '__call__'):
             self._callable = plugin_args['callable']
         else:
             raise ValueError('plugin_args must contain a callable function')

nipype/workflows/fmri/fsl/estimate.py

@@ -44,7 +44,7 @@ def create_modelfit_workflow(name='modelfit', f_contrasts=False):
 
     version = 0
     if fsl.Info.version() and \
-        LooseVersion(fsl.Info.version()) > LooseVersion('5.0.6'):
+            LooseVersion(fsl.Info.version()) > LooseVersion('5.0.6'):
         version = 507
 
     modelfit = pe.Workflow(name=name)

nipype/workflows/fmri/fsl/preprocess.py

@@ -421,7 +421,7 @@ def create_featreg_preproc(name='featpreproc', highpass=True, whichvol='middle')
 
     version = 0
     if fsl.Info.version() and \
-        LooseVersion(fsl.Info.version()) > LooseVersion('5.0.6'):
+            LooseVersion(fsl.Info.version()) > LooseVersion('5.0.6'):
         version = 507
 
     featpreproc = pe.Workflow(name=name)

tools/checkspecs.py

@@ -246,7 +246,7 @@ def test_specs(self, uri):
                     if 'parent' in trait.__dict__:
                         parent_metadata = list(getattr(trait, 'parent').__dict__.keys())
                     if key not in allowed_keys + classinst._additional_metadata\
-                        + parent_metadata:
+                            + parent_metadata:
                         bad_specs.append([uri, c, 'Inputs', traitname, key])
                     if key == 'mandatory' and trait.mandatory is not None and not trait.mandatory:
                         bad_specs.append([uri, c, 'Inputs', traitname, 'mandatory=False'])
@@ -361,7 +361,7 @@ def discover_modules(self):
             for dirname in dirnames[:]: # copy list - we modify inplace
                 package_uri = '.'.join((root_uri, dirname))
                 if (self._uri2path(package_uri) and
-                    self._survives_exclude(package_uri, 'package')):
+                        self._survives_exclude(package_uri, 'package')):
                     modules.append(package_uri)
                 else:
                     dirnames.remove(dirname)
@@ -370,7 +370,7 @@ def discover_modules(self):
                 module_name = filename[:-3]
                 module_uri = '.'.join((root_uri, module_name))
                 if (self._uri2path(module_uri) and
-                    self._survives_exclude(module_uri, 'module')):
+                        self._survives_exclude(module_uri, 'module')):
                     modules.append(module_uri)
         return sorted(modules)