new/updated autotests

Author: rciric

nipype/interfaces/afni/tests/test_auto_Localstat.py

@@ -0,0 +1,71 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from __future__ import unicode_literals
+from ..utils import Localstat
+
+
+def test_Localstat_inputs():
+    input_map = dict(
+        args=dict(argstr='%s', ),
+        automask=dict(argstr='-automask', ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        grid_rmode=dict(
+            argstr='-grid_rmode %s',
+            requires=['reduce_restore_grid'],
+        ),
+        in_file=dict(
+            argstr='%s',
+            mandatory=True,
+            position=-1,
+        ),
+        mask_file=dict(argstr='-mask %s', ),
+        neighborhood=dict(
+            argstr="-nbhd '%s(%s)'",
+            mandatory=True,
+        ),
+        nonmask=dict(argstr='-use_nonmask', ),
+        num_threads=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        out_file=dict(
+            argstr='-prefix %s',
+            keep_extension=True,
+            name_source='in_file',
+            name_template='%s_localstat',
+            position=0,
+        ),
+        outputtype=dict(),
+        overwrite=dict(argstr='-overwrite', ),
+        quiet=dict(argstr='-quiet', ),
+        reduce_grid=dict(
+            argstr='-reduce_grid %s',
+            xor=['reduce_restore_grid', 'reduce_max_vox'],
+        ),
+        reduce_max_vox=dict(
+            argstr='-reduce_max_vox %s',
+            xor=['reduce_restore_grid', 'reduce_grid'],
+        ),
+        reduce_restore_grid=dict(
+            argstr='-reduce_restore_grid %s',
+            xor=['reduce_max_vox', 'reduce_grid'],
+        ),
+        stat=dict(
+            argstr='-stat %s...',
+            mandatory=True,
+        ),
+    )
+    inputs = Localstat.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+def test_Localstat_outputs():
+    output_map = dict(out_file=dict(), )
+    outputs = Localstat.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value

nipype/interfaces/afni/tests/test_auto_ROIStats.py

@@ -6,26 +6,42 @@
 def test_ROIStats_inputs():
     input_map = dict(
         args=dict(argstr='%s', ),
+        debug=dict(argstr='-debug', ),
         environ=dict(
             nohash=True,
             usedefault=True,
         ),
+        format1D=dict(
+            argstr='-1Dformat',
+            xor=['format1DR'],
+        ),
+        format1DR=dict(
+            argstr='-1DRformat',
+            xor=['format1D'],
+        ),
         in_file=dict(
             argstr='%s',
             mandatory=True,
-            position=-1,
+            position=-2,
         ),
-        mask=dict(
-            argstr='-mask %s',
-            position=3,
-        ),
-        mask_f2short=dict(
-            argstr='-mask_f2short',
-            position=2,
+        mask_f2short=dict(argstr='-mask_f2short', ),
+        mask_file=dict(argstr='-mask %s', ),
+        nobriklab=dict(argstr='-nobriklab', ),
+        nomeanout=dict(argstr='-nomeanout', ),
+        num_roi=dict(argstr='-numroi %s', ),
+        out_file=dict(
+            argstr='> %s',
+            keep_extension=False,
+            name_source='in_file',
+            name_template='%s_roistat.1D',
+            position=-1,
         ),
-        quiet=dict(
-            argstr='-quiet',
-            position=1,
+        quiet=dict(argstr='-quiet', ),
+        roisel=dict(argstr='-roisel %s', ),
+        stat=dict(argstr='%s...', ),
+        zerofill=dict(
+            argstr='-zerofill %s',
+            requires=['num_roi'],
         ),
     )
     inputs = ROIStats.input_spec()
@@ -34,7 +50,7 @@ def test_ROIStats_inputs():
         for metakey, value in list(metadata.items()):
             assert getattr(inputs.traits()[key], metakey) == value
 def test_ROIStats_outputs():
-    output_map = dict(stats=dict(), )
+    output_map = dict(out_file=dict(), )
     outputs = ROIStats.output_spec()
 
     for key, metadata in list(output_map.items()):

nipype/interfaces/afni/tests/test_auto_ReHo.py

@@ -0,0 +1,56 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from __future__ import unicode_literals
+from ..utils import ReHo
+
+
+def test_ReHo_inputs():
+    input_map = dict(
+        args=dict(argstr='%s', ),
+        chi_sq=dict(argstr='-chi_sq', ),
+        ellipsoid=dict(
+            argstr='-neigh_X %s -neigh_Y %s -neigh_Z %s',
+            xor=['sphere', 'neighborhood'],
+        ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        in_file=dict(
+            argstr='-inset %s',
+            mandatory=True,
+            position=1,
+        ),
+        label_set=dict(argstr='-in_rois %s', ),
+        mask=dict(argstr='-mask %s', ),
+        neighborhood=dict(
+            argstr='-nneigh %s',
+            xor=['sphere', 'ellipsoid'],
+        ),
+        out_file=dict(
+            argstr='-prefix %s',
+            keep_extension=True,
+            name_source='in_file',
+            name_template='%s_localstat',
+            position=0,
+        ),
+        overwrite=dict(argstr='-overwrite', ),
+        sphere=dict(
+            argstr='-neigh_RAD %s',
+            xor=['neighborhood', 'ellipsoid'],
+        ),
+    )
+    inputs = ReHo.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+def test_ReHo_outputs():
+    output_map = dict(
+        out_file=dict(),
+        out_vals=dict(),
+    )
+    outputs = ReHo.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value