Merge pull request #814 from swederik/bf/streamtrack

Fix for stop argstr in MRtrix's Streamtrack interface

Author: chrisgorgo

nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py

@@ -94,7 +94,7 @@ def test_DiffusionTensorStreamlineTrack_inputs():
     step_size=dict(argstr='-step %s',
     units='mm',
     ),
-    stop=dict(argstr='-gzip',
+    stop=dict(argstr='-stop',
     ),
     terminal_output=dict(mandatory=True,
     nohash=True,

nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py

@@ -92,7 +92,7 @@ def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_inputs():
     step_size=dict(argstr='-step %s',
     units='mm',
     ),
-    stop=dict(argstr='-gzip',
+    stop=dict(argstr='-stop',
     ),
     terminal_output=dict(mandatory=True,
     nohash=True,

nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py

@@ -90,7 +90,7 @@ def test_SphericallyDeconvolutedStreamlineTrack_inputs():
     step_size=dict(argstr='-step %s',
     units='mm',
     ),
-    stop=dict(argstr='-gzip',
+    stop=dict(argstr='-stop',
     ),
     terminal_output=dict(mandatory=True,
     nohash=True,

nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py

@@ -90,7 +90,7 @@ def test_StreamlineTrack_inputs():
     step_size=dict(argstr='-step %s',
     units='mm',
     ),
-    stop=dict(argstr='-gzip',
+    stop=dict(argstr='-stop',
     ),
     terminal_output=dict(mandatory=True,
     nohash=True,

nipype/interfaces/mrtrix/tracking.py

@@ -99,7 +99,7 @@ class StreamlineTrackInputSpec(CommandLineInputSpec):
     inputmodel = traits.Enum('DT_STREAM', 'SD_PROB', 'SD_STREAM',
         argstr='%s', desc='input model type', usedefault=True, position=-3)
 
-    stop = traits.Bool(argstr='-gzip', desc="stop track as soon as it enters any of the include regions.")
+    stop = traits.Bool(argstr='-stop', desc="stop track as soon as it enters any of the include regions.")
     do_not_precompute = traits.Bool(argstr='-noprecomputed', desc="Turns off precomputation of the legendre polynomial values. Warning: this will slow down the algorithm by a factor of approximately 4.")
     unidirectional = traits.Bool(argstr='-unidirectional', desc="Track from the seed point in one direction only (default is to track in both directions).")
     no_mask_interpolation = traits.Bool(argstr='-nomaskinterp', desc="Turns off trilinear interpolation of mask images.")