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Shoshana Berleant
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nipype/algorithms/compcor.py

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@@ -16,6 +16,7 @@
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from ..pipeline import engine as pe
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from ..interfaces.utility import IdentityInterface
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from .misc import regress_poly
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from ..external.due import BibTeX, Doi, due
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import nibabel as nb
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import numpy as np
@@ -59,6 +60,19 @@ class CompCor(BaseInterface):
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'''
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input_spec = CompCorInputSpec
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output_spec = CompCorOutputSpec
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references_ = [{'entry': BibTeX("@article{compcor_2007,"
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"title = {A component based noise correction method (CompCor) for BOLD and perfusion based},"
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"volume = {37},"
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"number = {1},"
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"doi = {10.1016/j.neuroimage.2007.04.042},"
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"urldate = {2016-08-13},"
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"journal = {NeuroImage},"
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"author = {Behzadi, Yashar and Restom, Khaled and Liau, Joy and Liu, Thomas T.},"
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"year = {2007},"
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"pages = {90-101},}"
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),
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'tags': ['method', 'implementation']
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}]
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def _run_interface(self, runtime):
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imgseries = nb.load(self.inputs.realigned_file).get_data()

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