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Jakub Kaczmarzyk
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fix spelling errors + formatting
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doc/users/neurodocker.rst

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@@ -32,7 +32,7 @@ To view the Neurodocker help message
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image. The package manager is ``apt`` or ``yum``, depending on the base
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image.
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2. Next, users should configure the container to fit their needs. This includes
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installing neuroimaing software, installing packages from the chosen package
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installing neuroimaging software, installing packages from the chosen package
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manager, installing Python and Python packages, copying files from the local
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machine into the container, and other operations. The list of supported
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neuroimaging software packages is available in the ``neurodocker`` help
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Use NeuroDebian
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---------------
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This example install AFNI and ANTs from the NeuoDebian repositories. It also
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This example installs AFNI and ANTs from the NeuroDebian repositories. It also
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installs ``git`` and ``vim``.
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::
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$ docker run --rm kaczmarj/neurodocker:v0.3.2 generate --base neurodebian:stretch --pkg-manager apt --install afni ants git vim
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$ docker run --rm kaczmarj/neurodocker:v0.3.2 generate \
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--base neurodebian:stretch --pkg-manager apt \
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--install afni ants git vim
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Note: the ``--install`` option will install software using the package manager.
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Because the NeuroDebian repositories are enabled in the chosen base image, AFNI
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and ANTs may be installed using the package manager. git and vim are available
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in the default repositories.
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and ANTs may be installed using the package manager. ``git`` and ``vim`` are
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available in the default repositories.
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Other examples
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--------------
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Create a container with ``dcm2niix``, Nipype, and jupyter notebook. Install
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Miniconda as a non-root user, and activate the miniconda environment upon
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Miniconda as a non-root user, and activate the Miniconda environment upon
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running the container.
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::
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$ docker run --rm kaczmarj/neurodocker:v0.3.2 generate \

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