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remove SGE remnants
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nipype/pipeline/plugins/slurmgraph.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
1-
"""Parallel workflow execution via SGE
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"""Parallel workflow execution via SLURM
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"""
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import os
@@ -29,7 +29,7 @@ def node_completed_status( checknode):
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class SLURMGraphPlugin(GraphPluginBase):
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"""Execute using SGE
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"""Execute using SLURM
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The plugin_args input to run can be used to control the SGE execution.
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Currently supported options are:
@@ -60,14 +60,14 @@ def __init__(self, **kwargs):
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self._dont_resubmit_completed_jobs = plugin_args['dont_resubmit_completed_jobs']
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else:
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self._dont_resubmit_completed_jobs = False
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super(SGEGraphPlugin, self).__init__(**kwargs)
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super(SLURMGraphPlugin, self).__init__(**kwargs)
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def _submit_graph(self, pyfiles, dependencies, nodes):
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def make_job_name(jobnumber, nodeslist):
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"""
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- jobnumber: The index number of the job to create
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- nodeslist: The name of the node being processed
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- return: A string representing this job to be displayed by SGE
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- return: A string representing this job to be displayed by SLURM
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"""
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job_name='j{0}_{1}'.format(jobnumber, nodeslist[jobnumber]._id)
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# Condition job_name to be a valid bash identifier (i.e. - is invalid)

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