move everything to scratch, build docs #1538

Author: oesteban

Dockerfile

@@ -38,7 +38,11 @@ RUN mkdir -p .nipype && \
     echo 'interface_level = DEBUG' >> .nipype/nipype.cfg && \
     echo 'filemanip_level = DEBUG' >> .nipype/nipype.cfg
 
-WORKDIR /root/src
+ADD docker/circleci/run_* /usr/bin/
+RUN chmod +x /usr/bin/run_*
+
+# Install this branch's code
+WORKDIR /scratch/src
 ADD . nipype/
 
 # Install the checked out version of nipype, check that requirements are
@@ -58,9 +62,6 @@ RUN cd nipype/ && \
     pip install -r requirements.txt && \
     pip install -e .
 
-WORKDIR /root/
-ADD docker/circleci/run_* /usr/bin/
-RUN chmod +x /usr/bin/run_*
 WORKDIR /scratch
 
 # RUN echo 'source /etc/profile.d/nipype_tests.sh' >> /etc/bash.bashrc

circle.yml

@@ -19,6 +19,7 @@ dependencies:
 
 test:
   override:
+    - docker run -i -v /etc/localtime:/etc/localtime:ro -v ~/scratch:/scratch -w /scratch --entrypoint="/usr/bin/run_builddocs.sh" nipype/testbench
     - docker run -i -v /etc/localtime:/etc/localtime:ro -v ~/scratch:/scratch -w /scratch nipype/testbench test_spm Linear workflow3d workflow4d :
         timeout: 1600
     - docker run -i -v /etc/localtime:/etc/localtime:ro -v ~/scratch:/scratch -w /scratch nipype/testbench fmri_fsl_feeds Linear l1pipeline

docker/circleci/run_builddocs.sh

@@ -0,0 +1,9 @@
+#!/bin/bash
+for i in /etc/profile.d/*.sh; do
+    source $i
+done
+source activate nipypetests-2.7
+
+set -o pipefail && cd /scratch/src/nipype/doc && make html 2>&1 | tee /scratch/builddoc.log
+cat /scratch/builddoc.log && if grep -q "ERROR" /scratch/builddoc.log; then false; else true; fi
+

docker/circleci/run_examples.sh

@@ -3,4 +3,4 @@ for i in /etc/profile.d/*.sh; do
     source $i
 done
 source activate nipypetests-2.7
-python /root/src/nipype/tools/run_examples.py $@
+python /scratch/src/nipype/tools/run_examples.py $@

docker/circleci/run_nosetests.sh

@@ -3,4 +3,5 @@ for i in /etc/profile.d/*.sh; do
     source $i
 done
 source activate nipypetests-2.7
+cd src/nipype
 nosetests --with-doctest -c ./.noserc --logging-level=DEBUG --verbosity=3 $@