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Commit bc88a03

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bpinsard
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fix the TCorrMap histogram options
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-4
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+7
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nipype/interfaces/afni/preprocess.py

Lines changed: 7 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1698,16 +1698,16 @@ class TCorrMapInputSpec(AFNIBaseCommandInputSpec):
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expr = traits.Str()
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average_expr = File(
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argstr='-Aexpr %s %s', suffix='_aexpr',
1701-
xor=_expr_opts)
1701+
name_source='in_file', xor=_expr_opts)
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average_expr_nonzero = File(
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argstr='-Cexpr %s %s', suffix='_cexpr',
1704-
xor=_expr_opts)
1704+
name_source='in_file', xor=_expr_opts)
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sum_expr = File(
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argstr='-Sexpr %s %s', suffix='_sexpr',
1707-
xor=_expr_opts)
1707+
name_source='in_file', xor=_expr_opts)
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histogram_bin_numbers = traits.Int()
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histogram = File(
1710-
argstr='-Hist %d %s', suffix='_hist')
1710+
name_source='in_file', argstr='-Hist %d %s', suffix='_hist')
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class TCorrMapOutputSpec(TraitedSpec):
@@ -1756,6 +1756,9 @@ def _format_arg(self, name, trait_spec, value):
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return trait_spec.argstr % self.inputs.thresholds + [value]
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elif name in self.inputs._expr_opts:
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return trait_spec.argstr % (self.inputs.expr, value)
1759+
elif name == 'histogram':
1760+
return trait_spec.argstr % (self.inputs.histogram_bin_numbers,
1761+
value)
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else:
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return super(TCorrMap, self)._format_arg(name, trait_spec, value)
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