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nipype/interfaces/dipy/anisotropic_power.py

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -60,7 +60,10 @@ def _run_interface(self, runtime):
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# Fit it
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model = shm.QballModel(gtab,8)
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sphere = get_sphere('symmetric724')
63-
peaks = peaks_from_model(model=model, data=data, relative_peak_threshold=.5, min_separation_angle=25, sphere=sphere, mask=mask)
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peaks = peaks_from_model(model=model, data=data,
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relative_peak_threshold=.5,
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min_separation_angle=25,
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sphere=sphere, mask=mask)
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apm = shm.anisotropic_power(peaks.shm_coeff)
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out_file = self._gen_filename('apm')
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nb.Nifti1Image(apm.astype("float32"), affine).to_filename(out_file)

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