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fixed example, added dummy files
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nipype/interfaces/fsl/dti.py

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@@ -488,16 +488,17 @@ class ProbTrackX2(ProbTrackX):
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--------
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>>> from nipype.interfaces import fsl
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>>> pbx2 = fsl.ProbTrackX2 seed='data.bedpostX/seed_source.nii.gz', \
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thsamples=['data.bedpostX/merged_th1samples.nii.gz'], \
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fsamples=['data.bedpostX/merged_f1samples.nii.gz'], \
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phsamples=['data.bedpostX/merged_ph1samples.nii.gz'], \
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mask='data.bedpostX/nodif_brain_mask.nii.gz', \
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out_dir='.',
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n_samples=3, \
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n_steps=10)
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>>> pbx2 = fsl.ProbTrackX2()
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>>> pbx2.inputs.seed = 'seed_source.nii.gz'
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>>> pbx2.inputs.thsamples = 'merged_th1samples.nii.gz'
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>>> pbx2.inputs.fsamples = 'merged_f1samples.nii.gz'
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>>> pbx2.inputs.phsamples = 'merged_ph1samples.nii.gz'
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>>> pbx2.inputs.mask = 'nodif_brain_mask.nii.gz'
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>>> pbx2.inputs.out_dir = '.'
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>>> pbx2.inputs.n_samples = 3
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>>> pbx2.inputs.n_steps = 10
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>>> pbx2.cmdline
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'probtrackx2 --forcedir -m data.bedpostX/nodif_brain_mask.nii.gz --nsamples=3 --nsteps=10 --opd --dir=. --samples=merged --seed=data.bedpostX/seed_source.nii.gz'
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'probtrackx2 --forcedir -m nodif_brain_mask.nii.gz --nsamples=3 --nsteps=10 --opd --dir=. --samples=merged --seed=seed_source.nii.gz'
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"""
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_cmd = 'probtrackx2'
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input_spec = ProbTrackX2InputSpec

nipype/testing/data/merged_f1samples.nii.gz

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nipype/testing/data/merged_ph1samples.nii.gz

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nipype/testing/data/merged_th1samples.nii.gz

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nipype/testing/data/nodif_brain_mask.nii.gz

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nipype/testing/data/seed_source.nii.gz

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