tst: updated tests

Author: satra

nipype/interfaces/fsl/epi.py

@@ -199,7 +199,7 @@ class TOPUP(FSLCommand):
         >>> topup.inputs.in_file = "b0_b0rev.nii"
         >>> topup.inputs.encoding_file = "topup_encoding.txt"
         >>> topup.cmdline #doctest: +ELLIPSIS
-        'topup --config=b02b0.cnf --datain=topup_encoding.txt --imain=b0_b0rev.nii --out=.../nipypetu'
+        'topup --config=b02b0.cnf --datain=topup_encoding.txt --imain=b0_b0rev.nii --out=b0_b0rev_base --iout=b0_b0rev_corrected.nii.gz --fout=b0_b0rev_field.nii.gz --logout=b0_b0rev_topup.log'
         >>> res = topup.run() # doctest: +SKIP
 
     """

nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py

@@ -22,14 +22,20 @@ def test_ApplyTOPUP_inputs():
     in_index=dict(argstr='%s',
     mandatory=True,
     ),
-    in_topup=dict(argstr='--topup=%s',
-    mandatory=True,
+    in_topup_fieldcoef=dict(argstr='--topup=%s',
+    copyfile=False,
+    requires=['in_topup_movpar'],
+    ),
+    in_topup_movpar=dict(copyfile=False,
+    requires=['in_topup_fieldcoef'],
     ),
     interp=dict(argstr='--interp=%s',
     ),
     method=dict(argstr='--method=%s',
     ),
-    out_base=dict(argstr='--out=%s',
+    out_corrected=dict(argstr='--out=%s',
+    name_source=['in_files'],
+    name_template='%s_corrected',
     ),
     output_type=dict(),
     terminal_output=dict(mandatory=True,

nipype/interfaces/fsl/tests/test_auto_TOPUP.py

@@ -40,7 +40,6 @@ def test_TOPUP_inputs():
     ),
     out_base=dict(argstr='--out=%s',
     hash_files=False,
-    keep_extension=True,
     name_source=['in_file'],
     name_template='%s_base',
     ),

requirements.txt

@@ -2,6 +2,6 @@ numpy>=1.3
 scipy>=0.7
 networkx>=1.0
 traits>=4.0
-dateutil>=1.5
+#dateutil>=1.5
 nibabel>=1.0
 nose>=1.0