New interface TkRegister2

Author: juhuntenburg

nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py

@@ -0,0 +1,48 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from nipype.testing import assert_equal
+from nipype.interfaces.freesurfer.utils import Tkregister2
+
+def test_Tkregister2_inputs():
+    input_map = dict(args=dict(argstr='%s',
+    ),
+    environ=dict(nohash=True,
+    usedefault=True,
+    ),
+    fsl=dict(argstr='--fsl %s',
+    ),
+    ignore_exception=dict(nohash=True,
+    usedefault=True,
+    ),
+    mov=dict(argstr='--mov %s',
+    mandatory=True,
+    ),
+    noedit=dict(argstr='--noedit',
+    ),
+    out_reg_file=dict(argstr='--reg %s',
+    mandatory=True,
+    name_source='fsl',
+    name_template='%s.dat',
+    ),
+    subject_id=dict(argstr='--s %s',
+    mandatory=True,
+    ),
+    subjects_dir=dict(),
+    terminal_output=dict(mandatory=True,
+    nohash=True,
+    ),
+    )
+    inputs = Tkregister2.input_spec()
+
+    for key, metadata in input_map.items():
+        for metakey, value in metadata.items():
+            yield assert_equal, getattr(inputs.traits()[key], metakey), value
+
+def test_Tkregister2_outputs():
+    output_map = dict(out_reg_file=dict(),
+    )
+    outputs = Tkregister2.output_spec()
+
+    for key, metadata in output_map.items():
+        for metakey, value in metadata.items():
+            yield assert_equal, getattr(outputs.traits()[key], metakey), value
+

nipype/interfaces/freesurfer/utils.py

@@ -1188,3 +1188,26 @@ class ExtractMainComponent(CommandLine):
     _cmd='mris_extract_main_component'
     input_spec=ExtractMainComponentInputSpec
     output_spec=ExtractMainComponentOutputSpec
+
+class Tkregister2InputSpec(FSTraitedSpec):
+
+    mov = File(exists=True, mandatory=True, argstr="--mov %s")
+    fsl = File(exists=True, argstr="--fsl %s")
+    subject_id = traits.String(argstr="--s %s", mandatory=True)
+    noedit = traits.Bool(argstr="--noedit")
+    out_reg_file = File(name_template='%s.dat', name_source='fsl', mandatory=True, argstr="--reg %s")
+
+
+class Tkregister2OutputSpec(TraitedSpec):
+
+    out_reg_file = File(exists=True)
+
+
+class Tkregister2(FSCommand):
+    
+    _cmd = "tkregister2"
+    input_spec = Tkregister2InputSpec
+    output_spec = Tkregister2OutputSpec
+    
+
+