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Shoshana Berleant
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undo accidental changes to test_compcor
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nipype/algorithms/tests/test_compcor.py

Lines changed: 7 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -14,18 +14,19 @@
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class TestCompCor(unittest.TestCase):
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''' Note: Tests currently do a poor job of testing functionality '''
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filenames = {
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'in_file': None,
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'label_file': None,
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'out_file': 'stats.tsv'
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}
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filenames = {'functionalnii': 'compcorfunc.nii',
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'masknii': 'compcormask.nii',
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'components_file': None}
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def setUp(self):
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# setup
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self.orig_dir = os.getcwd()
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self.temp_dir = tempfile.mkdtemp()
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os.chdir(self.temp_dir)
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noise = np.fromfunction(self.fake_noise_fun, self.fake_data.shape)
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self.realigned_file = utils.save_toy_nii(self.fake_data + noise,
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self.filenames['functionalnii'])
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mask = np.ones(self.fake_data.shape[:3])
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mask[0,0,0] = 0
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mask[0,0,1] = 0
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self.mask_file = utils.save_toy_nii(mask, self.filenames['masknii'])

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