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lines changed Original file line number Diff line number Diff line change 14
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class TestCompCor (unittest .TestCase ):
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''' Note: Tests currently do a poor job of testing functionality '''
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- filenames = {
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- 'in_file' : None ,
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- 'label_file' : None ,
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- 'out_file' : 'stats.tsv'
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- }
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+ filenames = {'functionalnii' : 'compcorfunc.nii' ,
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+ 'masknii' : 'compcormask.nii' ,
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+ 'components_file' : None }
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def setUp (self ):
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# setup
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self .orig_dir = os .getcwd ()
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self .temp_dir = tempfile .mkdtemp ()
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os .chdir (self .temp_dir )
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-
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+ noise = np .fromfunction (self .fake_noise_fun , self .fake_data .shape )
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+ self .realigned_file = utils .save_toy_nii (self .fake_data + noise ,
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+ self .filenames ['functionalnii' ])
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+ mask = np .ones (self .fake_data .shape [:3 ])
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mask [0 ,0 ,0 ] = 0
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mask [0 ,0 ,1 ] = 0
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self .mask_file = utils .save_toy_nii (mask , self .filenames ['masknii' ])
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