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use Linear interpolation by default
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nipype/workflows/dmri/fsl/artifacts.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -506,7 +506,7 @@ def ecc_pipeline(name='eddy_correct'):
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return wf
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def sdc_fmb(name='fmb_correction',
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def sdc_fmb(name='fmb_correction', interp='Linear',
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fugue_params=dict(smooth3d=2.0)):
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"""
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SDC stands for susceptibility distortion correction. FMB stands for
@@ -607,7 +607,7 @@ def sdc_fmb(name='fmb_correction',
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fmm2b0.inputs.winsorize_upper_quantile = 0.995
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applyxfm = pe.Node(ants.ApplyTransforms(
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dimension=3, interpolation='BSpline'), name='FMp_to_B0')
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dimension=3, interpolation=interp), name='FMp_to_B0')
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pre_fugue = pe.Node(fsl.FUGUE(save_fmap=True), name='PreliminaryFugue')
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demean = pe.Node(niu.Function(

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