Fixed tests.

Author: chrisgorgo

nipype/interfaces/afni/tests/test_preprocess.py

@@ -18,7 +18,7 @@ def test_allineate():
                      environ = dict(usedefault=True,),
                      ignore_exception = dict(usedefault=True,),
                      in_file = dict(argstr='-source %s',mandatory=True,),
-                     matrix = dict(argstr='-1dmatrix_apply %s',),
+                     in_matrix = dict(argstr='-1Dmatrix_apply %s',),
                      out_file = dict(argstr='-prefix %s'),
                      outputtype = dict(),
                      )

nipype/interfaces/fsl/tests/test_preprocess.py

@@ -503,8 +503,8 @@ def test_fugue():
                      phase_conjugate = dict(argstr='--phaseconj',),
                      phasemap_file = dict(argstr='--phasemap=%s',),
                      poly_order = dict(argstr='--poly=%d',),
-                     save_unmasked_fmap = dict(requires=['fmap_out_file'],argstr='--unmaskfmap=%s',),
-                     save_unmasked_shift = dict(requires=['shift_out_file'],argstr='--unmaskshift=%s',),
+                     save_unmasked_fmap = dict(requires=['fmap_out_file'],argstr='--unmaskfmap',),
+                     save_unmasked_shift = dict(requires=['shift_out_file'],argstr='--unmaskshift',),
                      shift_in_file = dict(argstr='--loadshift=%s',),
                      shift_out_file = dict(argstr='--saveshift=%s',),
                      smooth2d = dict(argstr='--smooth2=%.2f',),