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removed save_warped flag from FUGUE call since it doesn't seem to exist in the FUGUE interface
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  • nipype/workflows/dmri/fsl

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nipype/workflows/dmri/fsl/dti.py

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -521,8 +521,7 @@ def create_susceptibility_correct_pipeline(name="susceptibility_correct", fieldm
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# fugue -i %s -w %s --loadshift=%s --mask=%s % ( mag_name, magfw_name,
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# vsmmag_name, mask_name ), log ) # Forward Map
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vsm_fwd = pe.Node(interface=fsl.FUGUE(
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save_warped=True), name="vsm_fwd")
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vsm_fwd = pe.Node(interface=fsl.FUGUE(), name="vsm_fwd")
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vsm_reg = pe.Node(interface=fsl.FLIRT(bins=256, cost='corratio', dof=6, interp='spline', searchr_x=[
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-10, 10], searchr_y=[-10, 10], searchr_z=[-10, 10]), name="vsm_registration")
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# 'flirt -in %s -ref %s -out %s -init %s -applyxfm' % ( vsmmag_name, ref_epi, vsmmag_name, magfw_mat_out )

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