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fix: input to tsnr roi calc should be tsnr
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examples/fmri_ants_openfmri.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -903,7 +903,7 @@ def split_files(in_files, splits):
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get_roi_tsnr = pe.MapNode(fs.SegStats(default_color_table=True),
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iterfield=['in_file'], name='get_aparc_tsnr')
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get_roi_tsnr.inputs.avgwf_txt_file = True
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wf.connect(tsnr, 'detrended_file', get_roi_tsnr, 'in_file')
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wf.connect(tsnr, 'tsnr_file', get_roi_tsnr, 'in_file')
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wf.connect(registration, 'outputspec.aparc', get_roi_tsnr, 'segmentation_file')
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"""
@@ -987,6 +987,7 @@ def get_subs(subject_id, conds, run_id, model_id, task_id):
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wf.connect(art, 'intensity_files', datasink, 'qa.art.@intensity')
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wf.connect(art, 'outlier_files', datasink, 'qa.art.@outlier_files')
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wf.connect(registration, 'outputspec.anat2target', datasink, 'qa.anat2target')
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wf.connect(tsnr, 'tsnr_file', datasink, 'qa.tsnr.@map')
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if subjects_dir:
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wf.connect(registration, 'outputspec.min_cost_file', datasink, 'qa.mincost')
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wf.connect([(get_roi_tsnr, datasink, [('avgwf_txt_file', 'qa.tsnr'),

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